View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10191_low_14 (Length: 332)
Name: NF10191_low_14
Description: NF10191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10191_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 230 - 316
Target Start/End: Original strand, 41469383 - 41469472
Alignment:
| Q |
230 |
gctcataccttaaagctgaagaccatggaattggaacat---acaataagcaaatatagcgaggctaatgtgtttctaaagaaagtgatg |
316 |
Q |
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| T |
41469383 |
gctcataccttaaagctgaagaccatggaattggaacatcatacaataagcaaatatagcgaggctaatgtgtttctaaagaaagtgatg |
41469472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 175
Target Start/End: Original strand, 41469297 - 41469328
Alignment:
| Q |
144 |
cttaattcatagtactagctatttgtgttgca |
175 |
Q |
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| T |
41469297 |
cttaattcatagtactagctatttgtgttgca |
41469328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 41476420 - 41476502
Alignment:
| Q |
234 |
ataccttaaagctgaagaccatggaattggaacatacaataagcaaatatagcgaggctaatgtgtttctaaagaaagtgatg |
316 |
Q |
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| T |
41476420 |
ataccttaaagcagaagaccgatgaattggaacatacagcaagcaaatatgatgaggctaatgcgttcttaaggaaagtgatg |
41476502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 52471573 - 52471650
Alignment:
| Q |
239 |
ttaaagctgaagaccatggaattggaacatacaataagcaaatatagcgaggctaatgtgtttctaaagaaagtgatg |
316 |
Q |
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| T |
52471573 |
ttaaagttgaagaacatgaaattggaacagacaacaagcaaatatgatgaggctaatgtgttcctaatgaaactgatg |
52471650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 16418479 - 16418447
Alignment:
| Q |
235 |
taccttaaagctgaagaccatggaattggaaca |
267 |
Q |
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| T |
16418479 |
taccttaaagctgaagaccatggaattggaaca |
16418447 |
T |
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