View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10191_low_22 (Length: 251)

Name: NF10191_low_22
Description: NF10191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10191_low_22
NF10191_low_22
[»] chr4 (1 HSPs)
chr4 (1-232)||(49643150-49643381)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 49643150 - 49643381
Alignment:
Q  1 tgatcctcatctttggggaacttcgtttcttgaattaccacagttttttaatgtaactgcgttaactttggaatctcgtgcttggccttggcaagaacac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49643150 tgatcctcatctttggggaacttcgtttcttgaattaccacatttttttaatgtaactgcgttaactttggaatctcgtgcttggccttggcaagaacac 49643249  T
Q  101 gctgttccttatccaacgtcgtttcatccaccgaatctcgctttgttggattcttggattcagcgtgttcgtcgatcaaagagatcttctcttgctcttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49643250 gctgttccttatccaacgtcgtttcatccaccgaatctcgctttgttggattcttggattcagcgtgttcgtcgatcaaagagatcttctcttgctcttt 49643349  T
Q  201 ttgcaggtggtggtggtttttctgctacgccc 232  Q
    ||||||||||||||||||||||||||||||||    
T  49643350 ttgcaggtggtggtggtttttctgctacgccc 49643381  T

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