View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10191_low_23 (Length: 250)
Name: NF10191_low_23
Description: NF10191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10191_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 54896175 - 54895934
Alignment:
| Q |
1 |
gtttatttgttttctggtttatgatggctgtggaggatcgtttggtgggtgaagatgttacagaagaaggttttccagttggtatgcgtgttctggctgt |
100 |
Q |
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| T |
54896175 |
gtttatttgttttctggtttatgatggctgtggaggatcgtttggtgggtgaagatgttacagaagaaggttttccagttggtatgcgtgttctggctgt |
54896076 |
T |
|
| Q |
101 |
tgatgatgatcagactagtctcaaagtgctggagaagcatcttctcacatgcaagtataatggttcgttgcctttctttttcatttggtcaatttgattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54896075 |
tgatgatgatcagactagtctcaaagtgctggagaagcatcttctcacatgcaagtataatggttcgttgcctttctttttcatttggtcaatttgattc |
54895976 |
T |
|
| Q |
201 |
tccatttatgatgctttcatgttttcacttactattcttctc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
54895975 |
tccatttatgatgctttcatgttttcacttactattcttctc |
54895934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 65 - 182
Target Start/End: Complemental strand, 54907369 - 54907252
Alignment:
| Q |
65 |
agaaggttttccagttggtatgcgtgttctggctgttgatgatgatcagactagtctcaaagtgctggagaagcatcttctcacatgcaagtataatggt |
164 |
Q |
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| T |
54907369 |
agaaggttttccggcgggtatgcgtgttctggcagttgatgacgatccaacttatctcaaagtgctggagaagcaacttctcacatgcaactataatggt |
54907270 |
T |
|
| Q |
165 |
tcgttgcctttctttttc |
182 |
Q |
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| T |
54907269 |
tcgttgcctttctttttc |
54907252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 54890851 - 54890694
Alignment:
| Q |
12 |
ttctggtttatgatggctgtggaggatcgtttggtgggtgaagatgt-tacagaagaaggttttccagttggtatgcgtgttctggctgttgatgatgat |
110 |
Q |
| |
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|||||||| | ||||||||||||| ||| ||||| || |||| |||| | |||| |||| |||||| || |||||||||||||||||||||||||| ||| |
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| T |
54890851 |
ttctggttcacgatggctgtggagaatcctttggaggttgaaaatgtcttcaga-gaagattttccggtgggtatgcgtgttctggctgttgatgacgat |
54890753 |
T |
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| Q |
111 |
cagactagtctcaaagtgctggagaagcatcttctcacatgcaagtataatggttcgtt |
169 |
Q |
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|| ||| |||||||| || |||||||| |||||| | |||||||||||||||||||| |
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| T |
54890752 |
caaacttgtctcaaactgttggagaagtttcttcttatgtgcaagtataatggttcgtt |
54890694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 22084543 - 22084579
Alignment:
| Q |
70 |
gttttccagttggtatgcgtgttctggctgttgatga |
106 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||||| |
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| T |
22084543 |
gttttcctgttggtatgcgtgttcttgctgttgatga |
22084579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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