View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10191_low_24 (Length: 250)
Name: NF10191_low_24
Description: NF10191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10191_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 33305587 - 33305347
Alignment:
| Q |
1 |
ttgaagaagagctagcgatgctttgtgctgctcttaagtgaaagataaatttcatgtgtctgcatcatgagcatcttcatcgtatgcaatagaacgtgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33305587 |
ttgaagaagagctagcgatgctttgtgctgctcttaagtgaaagataaatttcatgtgtctgcatcatgagcatcttcatcgtatgcaatagaacgtgaa |
33305488 |
T |
|
| Q |
101 |
tcatcttcttgtccattagtattagaacaattattgatcatgtcattttgctgaaaatgtggaggcacaccatgcttcttgaaacatgtatctatggtgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33305487 |
tcatcttcttgtccattagtattagaacaattattgatcatatcattttgctgaaaatgtggaggcacaccatgcttcttgaaacatgtatctatggtgt |
33305388 |
T |
|
| Q |
201 |
gaccacttctgacacaaaagaacaaattctgatgcctttgc |
241 |
Q |
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| T |
33305387 |
gaccacttctgccacaaaagaacaaattctgatgcctttgc |
33305347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30870256 - 30870019
Alignment:
| Q |
1 |
ttgaagaagagctagcgatgctttgtgctgctcttaagtgaaagataaatttcatgtgtctgcatcatgagcatcttcatcgtatgcaatagaacgtgaa |
100 |
Q |
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|||||||||||||||| | ||||||||||||||| ||||||||||||| |||| ||||||||||||||||| ||||||| | |||||||| ||| ||||| |
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| T |
30870256 |
ttgaagaagagctagcaacgctttgtgctgctctgaagtgaaagataactttcctgtgtctgcatcatgagtatcttcaccatatgcaatggaatgtgaa |
30870157 |
T |
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| Q |
101 |
tcatcttcttgtccattagtattagaacaattattgatcatgtcattttgctgaaaatgtggaggcacaccatgcttcttgaaacatgtatctatggtgt |
200 |
Q |
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| T |
30870156 |
tcaccttcttgtccagtagtgttagaacaattattgatcatgccattttgcggaaaatgag--gggataccatgcttcttgaaacatgtatctatggtgt |
30870059 |
T |
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| Q |
201 |
gaccacttctgacacaaaa-gaacaaattctgatgccttt |
239 |
Q |
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| T |
30870058 |
gaccacttctcccacaaaaggaacaaactctgatgccttt |
30870019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 29351473 - 29351278
Alignment:
| Q |
1 |
ttgaagaagagctagcgatgctttgtgctgctcttaagtgaaagataaatttcatgtgtctgcatcatgagcatcttcatcgtatgcaatagaacgtgaa |
100 |
Q |
| |
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||||||||||||||| |||| ||| || | |||| || ||| ||||| |||| ||||| || |||||||| |||||||||||||||||| ||| |||| |
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| T |
29351473 |
ttgaagaagagctagggatgatttatgtttctctgaacagaaggataactttcttgtgtgtgtatcatgagtatcttcatcgtatgcaattgaa--tgaa |
29351376 |
T |
|
| Q |
101 |
tcatcttcttgtccattagtattagaacaattattgatcatgtcattttgctgaaaatgtggaggcacaccatgcttcttgaaacatgtatctatggt |
198 |
Q |
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||||| | || ||||||| ||| |||||||| || |||| | ||||||| ||||| ||||| |||||||||||| |||||||||| ||| |||| |
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| T |
29351375 |
tcatcctattctccattaacattgaaacaattaatgttcataccgttttgctaaaaataaggaggtacaccatgcttcatgaaacatgtgtctttggt |
29351278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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