View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10191_low_3 (Length: 598)

Name: NF10191_low_3
Description: NF10191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10191_low_3
NF10191_low_3
[»] chr2 (1 HSPs)
chr2 (11-562)||(2433383-2433932)
[»] chr6 (1 HSPs)
chr6 (7-434)||(12438179-12438607)
[»] chr5 (4 HSPs)
chr5 (9-494)||(41654449-41654932)
chr5 (9-494)||(41646914-41647397)
chr5 (9-441)||(41620644-41621074)
chr5 (9-155)||(41465640-41465786)
[»] chr1 (2 HSPs)
chr1 (282-335)||(12636975-12637028)
chr1 (282-335)||(12609879-12609932)
[»] chr3 (3 HSPs)
chr3 (282-335)||(23145894-23145947)
chr3 (282-335)||(23036144-23036197)
chr3 (283-335)||(23039015-23039067)
[»] chr8 (1 HSPs)
chr8 (14-89)||(5022259-5022334)


Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 11 - 562
Target Start/End: Original strand, 2433383 - 2433932
Alignment:
Q  11 caaaggatatattgatgaaataaatcttcaagaactgaaatatgtaaaagcaataattaaagaaaccttaagattgcacccacctagtcctctactacta 110  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2433383 caaaggatatattgatgaaataaattttcaagaactgaaatatgtaaaagcaataattaaagaaaccttaagattgcacccacctagtcctctactacta 2433482  T
Q  111 ccaagagagtgtattgaaacttgtgagattaatggatacacaatatcatctggaacacaagtgtttgtgaatggatgggcaataggaagagaccaaaagt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2433483 ccaagagagtgtattgaaacttgtgagattaatggatacacaataccatctggaacacaagtgtttgtgaatggatgggcaataggaagagaccaaaagt 2433582  T
Q  211 attggagggaaggagaaaagttttatcctgagaggttcatgtattgtctaggtgattacaaagggtctaagtt-gagtacataccttttggtgcaggaag 309  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||    
T  2433583 attggagggaaggagaaaagttttatcctgagaggttcatggattgtctagttgattacaaagggtctaattttgagtacataccttttggtgcaggaag 2433682  T
Q  310 gagaatatgtccaggaatcacatttgctgaacctaatttagaatttcctcttgctcaattgttgtactattttgattggggacttccctatggaattact 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2433683 gagaatatgtccaggaatcacatttgctgaacctaatttagaatttcctcttgctcaattgttgtactattttgattggggacttccctatggaattact 2433782  T
Q  410 catgaaaatttggatatgactgaagtctttggtgcttctgtgaaaaggaaaaatggtctattcttaattccaagtctttacaatcatgtacctcttgaat 509  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2433783 catgaaaatttggatatgactgaagtgtttggtgcttctgtgaaaaggaaaaatggtctattcttaattccaagtctttacaatcatgtacctcttgaat 2433882  T
Q  510 aagagttttttaagctacctattgaatgaataaaattagttgaatatcattaa 562  Q
    |||||||||||||| |||||||||||||||||||   ||||||||||||||||    
T  2433883 aagagttttttaaggtacctattgaatgaataaa---agttgaatatcattaa 2433932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 434
Target Start/End: Complemental strand, 12438607 - 12438179
Alignment:
Q  7 gaagcaaaggatatattgatgaaataaatcttcaagaactgaaatatgtaaaagcaataattaaagaaaccttaagattgcacccacctagtcctctact 106  Q
    ||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||    
T  12438607 gaagcaagggatatgttgatgaaataaatcttcaagaactaaaatatttaaaagcagtgattaaagaaaccttaagattgcaccctcctggtcctctact 12438508  T
Q  107 actaccaagagagtgtattgaaacttgtgagattaatggatacacaatatcatctggaacacaagtgtttgtgaatggatgggcaataggaagagaccaa 206  Q
    | | ||||||||||||||||||| ||||| | |||| ||||||| |||| || | |||||||||||| ||||||||| ||||||||| |||||||||| |    
T  12438507 aattccaagagagtgtattgaaaattgtgtggttaacggatacataataccagccggaacacaagtgcttgtgaatgcatgggcaattggaagagaccca 12438408  T
Q  207 aagtattggagggaaggagaaaagttttatcctgagaggttcatgtattgtctaggtgattacaaagggtctaagtt-gagtacataccttttggtgcag 305  Q
    ||||||||||  ||||||||||||||| |||||||||| || ||  |||||| |  |||||||||||||||||| || ||||  |||||||||||||| |    
T  12438407 aagtattggaatgaaggagaaaagtttaatcctgagagatttattgattgtccaattgattacaaagggtctaatttcgagtttataccttttggtgctg 12438308  T
Q  306 gaaggagaatatgtccaggaatcacatttgctgaacctaatttagaatttcctcttgctcaattgttgtactattttgattggggacttccctatggaat 405  Q
    |||| ||||| ||||| || |||   || || |||  |  | | ||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||     
T  12438307 gaagaagaatgtgtcccggcatcttgttcgccgaagttggtatggaatttcctctggctcagttgttgtactattttgattggggacttccctctggaac 12438208  T
Q  406 tactcatgaaaatttggatatgactgaag 434  Q
    || |||||||||||| || ||||||||||    
T  12438207 tagtcatgaaaatttagacatgactgaag 12438179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 184; Significance: 3e-99; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 9 - 494
Target Start/End: Original strand, 41654449 - 41654932
Alignment:
Q  9 agcaaaggatatattgatgaaataaatcttcaagaactgaaatatgtaaaagcaataattaaagaaaccttaagattgcacccacctagtcctctactac 108  Q
    |||| ||||||| ||||||||| | |||||||||||||||||||| |||||||| | ||||||||||| |||||| |||| || |||| |||| | ||      
T  41654449 agcagaggatatgttgatgaaaaagatcttcaagaactgaaatatctaaaagcagttattaaagaaacattaagagtgcatcctcctaatcctgt-ct-- 41654545  T
Q  109 taccaagagagtgtattgaaacttgtgagattaatggatacacaatatcatctggaacacaagtgtttgtgaatggatgggcaataggaagagaccaaaa 208  Q
    | || |||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  41654546 ttcctagagagtgtattgaaacttgtgagataaatggatacacaataccagctggaacacaagtgtttgtgaatgcatgggcaattggaagagaccaaaa 41654645  T
Q  209 gtattggagggaaggagaaaagttttatcctgagaggttcatgtattgtctaggtgattacaaagggtctaa-gttgagtacataccttttggtgcagga 307  Q
    ||||||||  |||||||||||||||||||| ||||||||| || ||| |  |  ||||| || |||||||||  |||||| |||||||||||||||||||    
T  41654646 gtattggattgaaggagaaaagttttatccagagaggttcttggattcttcaattgatttcagagggtctaattttgagttcataccttttggtgcagga 41654745  T
Q  308 aggagaatatgtccaggaatcacatttgctgaacctaatttagaatttcctcttgctcaattgttgtactattttgattggggacttccctatggaatta 407  Q
    | |||||| ||||| |||||| | ||||||| | ||| | ||||| |||||||||| || ||| |||| | ||||||||||  ||| |||| |||||  |    
T  41654746 aagagaatgtgtcctggaatctcttttgctgcatctagtatagaacttcctcttgcacagttgctgtattcttttgattggaaactcccctctggaacca 41654845  T
Q  408 ctcatgaaaatttggatatgactgaagtctttggtgcttctgtgaaaaggaaaaatggtctattcttaattccaagtctttacaatc 494  Q
    ||||||||||||| || |||||||||  |||||| ||| | |||||||| |||| || ||||||  ||||||||| || ||||||||    
T  41654846 ctcatgaaaattttgacatgactgaatcctttggcgctacagtgaaaagaaaaagtgatctatttgtaattccaattccttacaatc 41654932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 9 - 494
Target Start/End: Original strand, 41646914 - 41647397
Alignment:
Q  9 agcaaaggatatattgatgaaataaatcttcaagaactgaaatatgtaaaagcaataattaaagaaaccttaagattgcacccacctagtcctctactac 108  Q
    |||| ||||||| ||||||||| | |||||||| ||||||||| | |||||||| | ||||||||||||||||||||||||||  ||| |||| | ||      
T  41646914 agcagaggatatgttgatgaaaaagatcttcaaaaactgaaatttctaaaagcagttattaaagaaaccttaagattgcacccttctaatcctat-ct-- 41647010  T
Q  109 taccaagagagtgtattgaaacttgtgagattaatggatacacaatatcatctggaacacaagtgtttgtgaatggatgggcaataggaagagaccaaaa 208  Q
    | || |||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||  ||||||||| ||||||||| ||||    
T  41647011 ttcctagagagtgtattgaaacttgtgagataaatggatacacaataccagctggaacacaagtgtttgtgaattcatgggcaattggaagagacgaaaa 41647110  T
Q  209 gtattggagggaaggagaaaagttttatcctgagaggttcatgtattgtctaggtgattacaaagggtctaa-gttgagtacataccttttggtgcagga 307  Q
     |||||||  |||||||||||||||||||| ||||||||| || ||| || |  | ||| || |||||||||  |||||| |||||||||||||||||||    
T  41647111 atattggattgaaggagaaaagttttatccagagaggttcttggattctccaattaatttcagagggtctaattttgagttcataccttttggtgcagga 41647210  T
Q  308 aggagaatatgtccaggaatcacatttgctgaacctaatttagaatttcctcttgctcaattgttgtactattttgattggggacttccctatggaatta 407  Q
    | |||||| ||||| |||||| | ||||||| | ||| | ||||| |||||||||| || ||| |||| | ||||||||||  ||| |||| |||||  |    
T  41647211 aagagaatgtgtcctggaatctcttttgctgcatctagtatagaacttcctcttgcacagttgctgtattcttttgattggaaactcccctctggaacca 41647310  T
Q  408 ctcatgaaaatttggatatgactgaagtctttggtgcttctgtgaaaaggaaaaatggtctattcttaattccaagtctttacaatc 494  Q
    ||||||||||||| || |||||||||  |||||| ||| | |||||||| |||| || ||||||  ||||||||| || ||||||||    
T  41647311 ctcatgaaaattttgacatgactgaatcctttggcgctacagtgaaaagaaaaagtgatctatttgtaattccaattccttacaatc 41647397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 9 - 441
Target Start/End: Complemental strand, 41621074 - 41620644
Alignment:
Q  9 agcaaaggatatattgatgaaataaatcttcaagaactgaaatatgtaaaagcaataattaaagaaaccttaagattgcacccacctagtcctctactac 108  Q
    |||| ||||||| ||||||||| | ||||| |||||||||||| | |||||||| | |||||||||||||| ||| |||| || |||| |||| |||| |    
T  41621074 agcagaggatatgttgatgaaaaagatcttgaagaactgaaatttctaaaagcagttattaaagaaaccttcagactgcatcctcctaatcctttacttc 41620975  T
Q  109 taccaagagagtgtattgaaacttgtgagattaatggatacacaatatcatctggaacacaagtgtttgtgaatggatgggcaataggaagagaccaaaa 208  Q
    ||   |||||||||  ||||||||||||||| ||||||||||||||| |    |||||||| ||||| ||||||  ||||||||| | ||||||||||||    
T  41620974 ta---agagagtgtgctgaaacttgtgagataaatggatacacaataccgggcggaacacacgtgttagtgaatacatgggcaattgcaagagaccaaaa 41620878  T
Q  209 gtattggagggaaggagaaaagttttatcctgagaggttcatgtattgtctaggtgattacaaagggtctaa-gttgagtacataccttttggtgcagga 307  Q
      ||||||| || ||||| ||||||||||| ||||||||| || ||| || |  |||||||||||| || ||  |||| | | |||||||||||||||||    
T  41620877 aaattggagtgatggagacaagttttatccagagaggttcttggattctccaattgattacaaaggatccaattttgatttcttaccttttggtgcagga 41620778  T
Q  308 aggagaatatgtccaggaatcacatttgctgaacctaatttagaatttcctcttgctcaattgttgtactattttgattggggacttccctatggaatta 407  Q
    | |||||| ||||| || ||    ||||||  |||||   ||||| |||||||||| || ||||| | |||||||||||||  | | || | |||||| |    
T  41620777 aagagaatgtgtcctggcattttgtttgctacacctaccatagaacttcctcttgcacagttgttattctattttgattggcaattaccatttggaatca 41620678  T
Q  408 ctcatgaaaatttggatatgactgaagtctttgg 441  Q
      ||||||||| | || |||||||||| ||||||    
T  41620677 gccatgaaaatcttgacatgactgaagcctttgg 41620644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 41465640 - 41465786
Alignment:
Q  9 agcaaaggatatattgatgaaataaatcttcaagaactgaaatatgtaaaagcaataattaaagaaaccttaagattgcacccacctagtcctctactac 108  Q
    ||||||||||| |||||||||| |  |||||||| |||||||||| | |||||| | || ||||||||  ||||||||||||| |||   ||||| || |    
T  41465640 agcaaaggatacattgatgaaacatctcttcaaggactgaaatatttgaaagcagtcatcaaagaaacactaagattgcaccctcctttccctcttcttc 41465739  T
Q  109 taccaagagagtgtattgaaacttgtgagattaatggatacacaata 155  Q
    | || ||||| || |  ||||||||||||||||| || |||||||||    
T  41465740 tccctagagaatgcagagaaacttgtgagattaaaggctacacaata 41465786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 12637028 - 12636975
Alignment:
Q  282 ttgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttg 335  Q
    |||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||    
T  12637028 ttgagtacattccttttggtgcaggaagaagaatatgcccaggcatcacatttg 12636975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 12609932 - 12609879
Alignment:
Q  282 ttgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttg 335  Q
    |||||||||| || |||||||| ||||| |||||||||||||| | ||||||||    
T  12609932 ttgagtacattccctttggtgctggaagaagaatatgtccaggtagcacatttg 12609879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 23145947 - 23145894
Alignment:
Q  282 ttgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttg 335  Q
    |||||||||| ||||||||||| ||||| |||||||||||||| | ||||||||    
T  23145947 ttgagtacattccttttggtgctggaagaagaatatgtccagggagcacatttg 23145894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 23036197 - 23036144
Alignment:
Q  282 ttgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttg 335  Q
    |||||||||| ||||||||||| ||||| |||||||| ||||| | ||||||||    
T  23036197 ttgagtacattccttttggtgccggaagaagaatatgcccagggagcacatttg 23036144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 23039067 - 23039015
Alignment:
Q  283 tgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttg 335  Q
    ||||||||| ||||||||||| ||||| |||||||| ||||| | ||||||||    
T  23039067 tgagtacattccttttggtgccggaagaagaatatgcccagggagcacatttg 23039015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 5022334 - 5022259
Alignment:
Q  14 aggatatattgatgaaataaatcttcaagaactgaaatatgtaaaagcaataattaaagaaaccttaagattgcac 89  Q
    ||||||| |||||||| |  ||||||||||| |||||| | |||||| | | |||||||||||||||||| |||||    
T  5022334 aggatatgttgatgaagtggatcttcaagaattgaaatttctaaaagaagtgattaaagaaaccttaagaatgcac 5022259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University