View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10191_low_30 (Length: 238)
Name: NF10191_low_30
Description: NF10191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10191_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 25767765 - 25767970
Alignment:
| Q |
14 |
caaaggaaagggttgtggaagttcataaatgacacttgtagtaaaacttctggaaacttgttaattggaggtgatttcaatagtgtattgttggttgatg |
113 |
Q |
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| T |
25767765 |
caaaggaaacggttatggaattttattaatgacttctgtaataaaacttctgggaacttgttaattggagttgatttcaatggtgtattgttggttgatg |
25767864 |
T |
|
| Q |
114 |
ataagttgaatggtaatctagttactcaagaggaaattcaagattttgtaaattgtctcctcttgaataatctatcagaggtaagaacaataggagatta |
213 |
Q |
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| T |
25767865 |
ataggttgagtggtaattcagttactcaacaggaaatttaagattttgcagattgtctcctcatgaataatctttcagaggtaagaacaataggagatta |
25767964 |
T |
|
| Q |
214 |
ttacac |
219 |
Q |
| |
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|||||| |
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| T |
25767965 |
ttacac |
25767970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 33634140 - 33634046
Alignment:
| Q |
66 |
gaaacttgttaattggaggtgatttcaatagtgtattgttggttgatgataagttgaatggtaatctagttactcaagaggaaattcaagatttt |
160 |
Q |
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| T |
33634140 |
gaaatttgttaataggtggtgactttaataatgtgttgttggttgatgataggcgtaatggtaatccagtgactcaacatgagattcaagatttt |
33634046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 40950761 - 40950967
Alignment:
| Q |
14 |
caaaggaaagggttgtggaagttcataaatgacacttgtagtaaaacttctggaaacttgttaattggaggtgatttcaatagtgtattgttggttgatg |
113 |
Q |
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| T |
40950761 |
caaaggaaggggttgtggaaatttattaatgacatatgtaataagacttctgggaacttgctaattggtggtgatttcaatagtgtattgttggttgatg |
40950860 |
T |
|
| Q |
114 |
ataagttgaatggtaatctagttactcaagaggaaattcaagattttgtaaattgtctcctcttgaataatctatcagaggtaagaacaataggagatta |
213 |
Q |
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||| ||||||||||||||| ||||||||| |||||||||||||||||| | ||||| | ||| |||||||| |||||||||||||| ||||| ||||| |
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| T |
40950861 |
ataggttgaatggtaatctggttactcaacaggaaattcaagattttgcagattgtatgctcactaataatctttcagaggtaagaactataggtgatta |
40950960 |
T |
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| Q |
214 |
ttacact |
220 |
Q |
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||||||| |
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| T |
40950961 |
ttacact |
40950967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 55714568 - 55714485
Alignment:
| Q |
136 |
tactcaagaggaaattcaagattttgtaaattgtctcctcttgaataatctatcagaggtaagaacaataggagattattacac |
219 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55714568 |
tactcaagaggaaattcaagattttgcaaattgtctcctcttgaataatctatcagaggtaagaacaataggagattattacac |
55714485 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 219
Target Start/End: Original strand, 5666223 - 5666386
Alignment:
| Q |
56 |
aaaacttctggaaacttgttaattggaggtgatttcaatagtgtattgttggttgatgataagttgaatggtaatctagttactcaagaggaaattcaag |
155 |
Q |
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|||| ||||||||| || || ||||||| || ||||||| ||| |||||||| |||| || ||||||||| |||| |||||| ||| | || ||||| | |
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| T |
5666223 |
aaaatttctggaaattttctacttggaggagacttcaataatgtcttgttggtcgatggtaggttgaatgggaatccagttacacaacaagagattcacg |
5666322 |
T |
|
| Q |
156 |
attttgtaaattgtctcctcttgaataatctatcagaggtaagaacaataggagattattacac |
219 |
Q |
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|||||| | || || ||| | ||||| || ||||||||||| || |||||||| |||||||| |
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| T |
5666323 |
attttgctgagtgccttctcctaaataacctctcagaggtaaggaccataggagagtattacac |
5666386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 3940908 - 3940814
Alignment:
| Q |
66 |
gaaacttgttaattggaggtgatttcaatagtgtattgttggttgatgataagttgaatggtaatctagttactcaagaggaaattcaagatttt |
160 |
Q |
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|||| |||||||| || ||||| || |||| ||| |||||||||||||||| | |||||||||| ||| |||||| | || |||||||||||| |
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| T |
3940908 |
gaaatttgttaataggtggtgactttaataatgtgttgttggttgatgataggcgtaatggtaatccagtgactcaacatgagattcaagatttt |
3940814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 1163417 - 1163339
Alignment:
| Q |
14 |
caaaggaaagggttgtggaagttcataaatgacacttgtagtaaaacttctggaaacttgttaattggaggtgatttca |
92 |
Q |
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||||||||| ||||||| || ||||| ||||||||||||| |||||||| ||| |||||||||||||||||| ||||| |
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| T |
1163417 |
caaaggaaaaggttgtgaaaattcattaatgacacttgtaataaaacttatggggacttgttaattggaggtggtttca |
1163339 |
T |
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