View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10191_low_34 (Length: 225)
Name: NF10191_low_34
Description: NF10191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10191_low_34 |
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| [»] scaffold0208 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 6199320 - 6199518
Alignment:
| Q |
15 |
atgaatcatataaattgaattgattgtggttttgtatctatacacgtaggccatcttttgtttgacatcatcattggctattttatgttattaaagtgat |
114 |
Q |
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| T |
6199320 |
atgaatcatataaattgaattgattgtggttttgtatctatacacgtatgccatcttttgttttacatcatcattggctattttatgttattaaagtgtt |
6199419 |
T |
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| Q |
115 |
tagctaatggatacatatactgtatattcatgttatgatcataatcgataaataatataaagtgtgttattgtttgaacttgattatattgtagataat |
213 |
Q |
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| T |
6199420 |
tagctaatggatacatatactgtatattcatgttatgatcataatcgataaataatatagagtgtgttattgtttgaacttgattatattgtagataat |
6199518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 9067032 - 9067234
Alignment:
| Q |
15 |
atgaatcatataaattgaattgattgtggttttgtatctatacacgtaggccatcttttgtttgacatcatcattggctattttatgttattaaagtgat |
114 |
Q |
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| T |
9067032 |
atgaatcatataaattgaattgattgtggttttgtatctatacacgtatgccatcttttgttttacatcatcattggctattttatgttattaaagtgat |
9067131 |
T |
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| Q |
115 |
tagctaatggata----catatactgtatattcatgttatgatcataatcgataaataatataaagtgtgttattgtttgaacttgattatattgtagat |
210 |
Q |
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| T |
9067132 |
tagctaatggatacatgcatatactgtatattcatgttatgatcataatcgataaataatataaagtgtgttattgtttgaacttgattatattgtacat |
9067231 |
T |
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| Q |
211 |
aat |
213 |
Q |
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||| |
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| T |
9067232 |
aat |
9067234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 970 - 790
Alignment:
| Q |
15 |
atgaatcatataaattgaattgattgtggttttgtatctatacacgtaggccatcttttgtttgacatcatcattggctattttatgttattaaagtgat |
114 |
Q |
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| T |
970 |
atgaatcatataaattgaattgattgtggttttttatctatacacgtatgtcatcttttgttttacatcatcattggctatttt---ttattaaagtgat |
874 |
T |
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| Q |
115 |
tagctaatggatacatatactgtatattcatgttatgatcataatcgataaataatataaagtgtgttattgtttgaacttgatta |
200 |
Q |
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| T |
873 |
tagctaatggatacatatattgtatattcatgttatgatcataatcgataaataatat--agtgttttattgtttgaacttgatta |
790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 26907905 - 26907744
Alignment:
| Q |
15 |
atgaatcatataaattgaattgattgtggttttgtatctatacacgtaggccatcttttgtttgacatcatcattggctattttatgttattaaagtgat |
114 |
Q |
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| T |
26907905 |
atgaatcatataaattgaattgattgtggttttgtatctatacacgtatgtcatcttttgttttacatcatcattggctatttt---ttattaaagtgat |
26907809 |
T |
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| Q |
115 |
tagctaatggatacatatactgtatattcatgttatgatcataatcgataaataatataaagtgt |
179 |
Q |
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| T |
26907808 |
tagctaatggatacgtatattgtatattcatgttatgatcataatcgataaataatataaagtgt |
26907744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 213
Target Start/End: Complemental strand, 17535894 - 17535741
Alignment:
| Q |
64 |
gccatcttttgtttgacatcatcattggctattttatgttattaaagtgattagctaatggatacatatactgtata-------ttcatgttatgatcat |
156 |
Q |
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| T |
17535894 |
gccatcttttgctttacgtcatcattggctattttat---attaaagtgattagctaatggatacatatactgtatactcaatattcatgttatgatcat |
17535798 |
T |
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| Q |
157 |
aatcgataaataatataaagtgtgttattgtttgaacttgattatattgtagataat |
213 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| |
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| T |
17535797 |
aatcgataaataatataaagtgttttattgtttgaacttgattacaatgtagataat |
17535741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 17008451 - 17008494
Alignment:
| Q |
15 |
atgaatcatataaattgaattgattgtggttttgtatctataca |
58 |
Q |
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| T |
17008451 |
atgaatcatataaattgaattgattgtggttttgtatctataca |
17008494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 17540499 - 17540456
Alignment:
| Q |
15 |
atgaatcatataaattgaattgattgtggttttgtatctataca |
58 |
Q |
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| T |
17540499 |
atgaatcatataaattgaattgattgtggttttgtatctataca |
17540456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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