View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10191_low_4 (Length: 472)
Name: NF10191_low_4
Description: NF10191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10191_low_4 |
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| [»] scaffold0143 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 33518241 - 33518692
Alignment:
| Q |
1 |
ccacaaaatagaatcaaacaattcctgaacaaaaggaaaagaaacgagtcaaccaaacgtattgaaccttttctttgttattaggtattttnnnnnnntg |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
33518241 |
ccacaaaatagaatcaaacaattcctgaacaagaggaaaagaaacgagtcaaccaaacgtattgaaccttttttttgttattaggtatttaaaaaaaaag |
33518340 |
T |
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| Q |
101 |
gctcatgcattcatttatgagttcaaatagtgnnnnnnnnnncctttgtaaaattcttgtaaagtgataatagatatatcaagaatacatcttagtaatg |
200 |
Q |
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||||||| |||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33518341 |
gctcatgtattcatttatgagttcaaatagtgttttttttttc-tttgtaaaattcttgtagagtgataatagatatatcaagaatacatcttagtaatg |
33518439 |
T |
|
| Q |
201 |
gaagaatattcaaagtatatacataaggt-atcttatttagaggttgatccagacatcatgctctaaaagggagaaaaacacagcatttaataattaaac |
299 |
Q |
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|| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33518440 |
ga-gaatattcaaagtatatacacaaggtgatcttatttagaggttgatccagacatcatgctctaaaagggagaaaaacacagcatttaataattaaac |
33518538 |
T |
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| Q |
300 |
aagtttaacacaattaatacaagtagaactattcaattgctttgttcattactagagttagtcctccaaaatccttgatccaaacatagacctaaatttt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33518539 |
aagtttaacacaattaatacaagtagaactattcaattgctttgttcattactagagttagtcctccaaaatccttgatccaaacatagacctaaatttt |
33518638 |
T |
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| Q |
400 |
gtcttccaaaatccttgatccaaaaatatactatatgttttggatgaagatgtg |
453 |
Q |
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| T |
33518639 |
gtcttccaaaatccttgatccaaaaatatactatatgttttggatgaagatgtg |
33518692 |
T |
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Target: scaffold0143 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0143
Description:
Target: scaffold0143; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 352 - 453
Target Start/End: Original strand, 2 - 103
Alignment:
| Q |
352 |
tagagttagtcctccaaaatccttgatccaaacatagacctaaattttgtcttccaaaatccttgatccaaaaatatactatatgttttggatgaagatg |
451 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2 |
tagagttagtcctccaaaatccttgatccaaacatagacctaaattttgtcttccaaaatccttgatccaaaaatatactatatgttttggatgaagatg |
101 |
T |
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| Q |
452 |
tg |
453 |
Q |
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|| |
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| T |
102 |
tg |
103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 345
Target Start/End: Original strand, 55447265 - 55447448
Alignment:
| Q |
163 |
agtgataatagatatatcaagaatacatcttagtaatggaagaatattcaaagtatatacataaggt-atcttatttagaggttgatccagacatcatgc |
261 |
Q |
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||||||||||| ||||||||| |||| ||||| |||||||||||||||||||| |||| | ||||| |||||| | |||||||||||| ||||| | |
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| T |
55447265 |
agtgataataggtatatcaagtatacttcttaaaaatggaagaatattcaaagtttatatacaaggtggccttattca-aggttgatccaggcatcacgg |
55447363 |
T |
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| Q |
262 |
tctaaaagggagaaaaacacagcat-ttaataattaaacaagtttaacacaattaatacaagtagaactattcaattgctttgtt |
345 |
Q |
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|||| |||||| |||||| || | |||||||||||| || |||| |||||| ||| || ||||||||||||| |||| |||| |
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| T |
55447364 |
tctagaagggataaaaactcaaagtattaataattaaataattttataacaattcataaaaatagaactattcaactgctatgtt |
55447448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 55447155 - 55447217
Alignment:
| Q |
1 |
ccacaaaatagaatcaaacaattcctgaacaaaaggaaaagaaacgagtcaaccaaacgtatt |
63 |
Q |
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|||||||||||||||||||||||||| || || |||| | |||| || ||||||||| ||||| |
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| T |
55447155 |
ccacaaaatagaatcaaacaattcctaaagaagaggatacgaaatgaatcaaccaaatgtatt |
55447217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 7046014 - 7045986
Alignment:
| Q |
1 |
ccacaaaatagaatcaaacaattcctgaa |
29 |
Q |
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| T |
7046014 |
ccacaaaatagaatcaaacaattcctgaa |
7045986 |
T |
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