View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10191_low_8 (Length: 384)
Name: NF10191_low_8
Description: NF10191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10191_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 379
Target Start/End: Complemental strand, 54896591 - 54896245
Alignment:
| Q |
20 |
tgagtcactcctaataacaaagtcgcggtgcgaaaatttcgtaatcattagatgccaaaataagcacacacatttaatgtccattaaacctcaataaact |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54896591 |
tgagtcactcctaataacaaagtcgcggtgcgaaaatttcgtaatcattagatgccaaaataagcacacacatttaatgtccattaaacctcaataaact |
54896492 |
T |
|
| Q |
120 |
caaaacaagcattgaaaattatagtattagtcataacaagcacatagtaatggttaagaaagnnnnnnnnctgataataaatttggaaagaaaatatcgt |
219 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
54896491 |
caaaacaagcatcgaaaattatagtattagtcataacaagcacatagtaatggttaagaaa--aaaaaaactgataataaatttggaaagaaaatatcgc |
54896394 |
T |
|
| Q |
220 |
atcaaatcatgaaatcaatttctttcctcaaaagtttctacttttgtttggcaaatccccaacaaatatatatttagatacaaaaccttattcttctttg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
54896393 |
atcaaatcatgaaatcaatttctttcctcaaaagtttctagttttgtttggcaaatccccaacaa--atatatttagttacaaaaccttattcttctttg |
54896296 |
T |
|
| Q |
320 |
ttgttaagaaaagagaacaaagggaacaaagccattaaatatatttgcattcttctctct |
379 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
54896295 |
ttgttaagaaaaga---------gaacaaagccattaaatatatttgcatttttctctct |
54896245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University