View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10192_2 (Length: 365)

Name: NF10192_2
Description: NF10192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10192_2
NF10192_2
[»] chr5 (7 HSPs)
chr5 (16-365)||(38816363-38816712)
chr5 (21-170)||(38821782-38821928)
chr5 (302-359)||(22423764-22423822)
chr5 (300-349)||(8420075-8420124)
chr5 (302-354)||(9929668-9929720)
chr5 (300-330)||(24906250-24906280)
chr5 (241-279)||(35665559-35665597)
[»] chr1 (1 HSPs)
chr1 (302-355)||(48547938-48547991)
[»] scaffold0168 (3 HSPs)
scaffold0168 (302-363)||(21217-21278)
scaffold0168 (302-363)||(21088-21149)
scaffold0168 (302-363)||(21346-21407)
[»] chr6 (5 HSPs)
chr6 (302-349)||(426478-426525)
chr6 (302-349)||(5732474-5732521)
chr6 (300-330)||(34073276-34073306)
chr6 (302-343)||(2117134-2117175)
chr6 (302-338)||(8805524-8805560)
[»] chr2 (6 HSPs)
chr2 (302-349)||(19536361-19536408)
chr2 (302-349)||(19574031-19574078)
chr2 (303-349)||(18255945-18255991)
chr2 (303-349)||(34691770-34691816)
chr2 (303-349)||(34714182-34714228)
chr2 (302-338)||(42511322-42511358)
[»] chr3 (4 HSPs)
chr3 (300-338)||(4466538-4466576)
chr3 (300-330)||(5440965-5440995)
chr3 (300-338)||(13807237-13807275)
chr3 (302-338)||(27505334-27505370)
[»] chr7 (2 HSPs)
chr7 (301-330)||(17852091-17852120)
chr7 (302-330)||(15680900-15680928)
[»] scaffold0450 (1 HSPs)
scaffold0450 (302-330)||(8564-8592)
[»] scaffold0027 (1 HSPs)
scaffold0027 (300-348)||(46731-46778)
[»] chr4 (2 HSPs)
chr4 (302-346)||(18844423-18844467)
chr4 (302-338)||(28470448-28470484)


Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 365
Target Start/End: Original strand, 38816363 - 38816712
Alignment:
Q  16 atgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816363 atgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagg 38816462  T
Q  116 gcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816463 gcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaa 38816562  T
Q  216 tatctagcaccgagacttcatattaaaggtgtgtccagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactatgaagcacgga 315  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38816563 tatctagcaccgagacttcatattaaaggtgtgtgcagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactatgaatcacgga 38816662  T
Q  316 cactcctcgaattagccatgtccgacaccgacaccacaccgacacataat 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816663 cactcctcgaattagccatgtccgacaccgacaccacaccgacacataat 38816712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
Q  21 aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa 120  Q
    |||||||||||||||| |||||  ||| ||||||| ||   ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| |    
T  38821782 aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca 38821878  T
Q  121 ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca 170  Q
      ||||  |||||||||||||| |||||||||||||||| ||||||||||    
T  38821879 ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca 38821928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 22423764 - 22423822
Alignment:
Q  302 ctatgaagcacggacactcctcgaattagccatgtcc-gacaccgacaccacaccgaca 359  Q
    ||||||||||||||||||||||| ||||| | ||||| ||||||||||| |||||||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgtgtccagacaccgacacgacaccgaca 22423822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 8420124 - 8420075
Alignment:
Q  300 aactatgaagcacggacactcctcgaattagccatgtccgacaccgacac 349  Q
    |||||||||||||||| |||||||||||||| |  |||||||||||||||    
T  8420124 aactatgaagcacggatactcctcgaattaggcgcgtccgacaccgacac 8420075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 9929720 - 9929668
Alignment:
Q  302 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacac 354  Q
    ||||||||||| ||||||||||||||||| | ||||||| |||||||| ||||    
T  9929720 ctatgaagcacagacactcctcgaattagtcgtgtccgataccgacacgacac 9929668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 330
Target Start/End: Original strand, 24906250 - 24906280
Alignment:
Q  300 aactatgaagcacggacactcctcgaattag 330  Q
    |||||||||||||||||||||||||||||||    
T  24906250 aactatgaagcacggacactcctcgaattag 24906280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 35665559 - 35665597
Alignment:
Q  241 aaggtgtgtccagtgtccaacagatgtcagtctccaaca 279  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  35665559 aaggtgtgtccagtgtccaacacatgtcagtttccaaca 35665597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 48547938 - 48547991
Alignment:
Q  302 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacacc 355  Q
    ||||||||||||||||||||||||||||| | | |||||||||||||| |||||    
T  48547938 ctatgaagcacggacactcctcgaattaggcgtatccgacaccgacacgacacc 48547991  T

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Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 21278 - 21217
Alignment:
Q  302 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 363  Q
    |||||||||||||| |||||||| ||||| | |||| ||||||||||| | |||||||||||    
T  21278 ctatgaagcacggatactcctcggattaggcgtgtctgacaccgacacgataccgacacata 21217  T

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Target: scaffold0168; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 21149 - 21088
Alignment:
Q  302 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 363  Q
    |||||||||||||| ||| |||| ||||| | |||| ||||||||||| | |||||||||||    
T  21149 ctatgaagcacggatacttctcggattaggcgtgtctgacaccgacacgataccgacacata 21088  T

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Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 21407 - 21346
Alignment:
Q  302 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 363  Q
    ||||||||||| |||||| |||| ||||| | |||| ||||||||||| | |||||||||||    
T  21407 ctatgaagcacagacacttctcggattaggcgtgtctgacaccgacacgataccgacacata 21346  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 349
Target Start/End: Original strand, 426478 - 426525
Alignment:
Q  302 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 349  Q
    ||||||||||||||||||||||  ||||| | ||||||||||||||||    
T  426478 ctatgaagcacggacactcctcagattaggcgtgtccgacaccgacac 426525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 349
Target Start/End: Original strand, 5732474 - 5732521
Alignment:
Q  302 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 349  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||    
T  5732474 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac 5732521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 330
Target Start/End: Original strand, 34073276 - 34073306
Alignment:
Q  300 aactatgaagcacggacactcctcgaattag 330  Q
    |||||||||||||||||||||||||||||||    
T  34073276 aactatgaagcacggacactcctcgaattag 34073306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 2117175 - 2117134
Alignment:
Q  302 ctatgaagcacggacactcctcgaattagccatgtccgacac 343  Q
    ||||||||||||||||||||||  ||||| ||||||||||||    
T  2117175 ctatgaagcacggacactcctccgattaggcatgtccgacac 2117134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 8805524 - 8805560
Alignment:
Q  302 ctatgaagcacggacactcctcgaattagccatgtcc 338  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  8805524 ctatgaagcacggacactcctcggattaggcatgtcc 8805560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 349
Target Start/End: Original strand, 19536361 - 19536408
Alignment:
Q  302 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 349  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||    
T  19536361 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac 19536408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 19574078 - 19574031
Alignment:
Q  302 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 349  Q
    |||||||||| ||||||||||||||||||   ||||||||||||||||    
T  19574078 ctatgaagcatggacactcctcgaattaggtgtgtccgacaccgacac 19574031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 18255945 - 18255991
Alignment:
Q  303 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 349  Q
    |||||||||||||||||||| | ||||| | ||||||||||||||||    
T  18255945 tatgaagcacggacactccttggattaggcgtgtccgacaccgacac 18255991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 34691770 - 34691816
Alignment:
Q  303 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 349  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34691770 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34691816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 34714182 - 34714228
Alignment:
Q  303 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 349  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34714182 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34714228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 42511322 - 42511358
Alignment:
Q  302 ctatgaagcacggacactcctcgaattagccatgtcc 338  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtcc 42511358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 4466538 - 4466576
Alignment:
Q  300 aactatgaagcacggacactcctcgaattagccatgtcc 338  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  4466538 aactatgaagcacggacactcctcgaataagccgtgtcc 4466576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 330
Target Start/End: Original strand, 5440965 - 5440995
Alignment:
Q  300 aactatgaagcacggacactcctcgaattag 330  Q
    |||||||||||||||||||||||||||||||    
T  5440965 aactatgaagcacggacactcctcgaattag 5440995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 13807275 - 13807237
Alignment:
Q  300 aactatgaagcacggacactcctcgaattagccatgtcc 338  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  13807275 aactatgaaacacggacactcctcgaattaggcatgtcc 13807237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 27505370 - 27505334
Alignment:
Q  302 ctatgaagcacggacactcctcgaattagccatgtcc 338  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcc 27505334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 17852120 - 17852091
Alignment:
Q  301 actatgaagcacggacactcctcgaattag 330  Q
    ||||||||||||||||||||||||||||||    
T  17852120 actatgaagcacggacactcctcgaattag 17852091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 15680928 - 15680900
Alignment:
Q  302 ctatgaagcacggacactcctcgaattag 330  Q
    |||||||||||||||||||||||||||||    
T  15680928 ctatgaagcacggacactcctcgaattag 15680900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 8564 - 8592
Alignment:
Q  302 ctatgaagcacggacactcctcgaattag 330  Q
    |||||||||||||||||||||||||||||    
T  8564 ctatgaagcacggacactcctcgaattag 8592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 46778 - 46731
Alignment:
Q  300 aactatgaagcacggacactcctcgaattagccatgtccgacaccgaca 348  Q
    ||||||||||||||||||||||||| ||||| | ||| |||||||||||    
T  46778 aactatgaagcacggacactcctcggattaggcgtgt-cgacaccgaca 46731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 18844423 - 18844467
Alignment:
Q  302 ctatgaagcacggacactcctcgaattagccatgtccgacaccga 346  Q
    |||||||||||||||||| |||| ||||| | |||||||||||||    
T  18844423 ctatgaagcacggacacttctcggattaggcgtgtccgacaccga 18844467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 28470484 - 28470448
Alignment:
Q  302 ctatgaagcacggacactcctcgaattagccatgtcc 338  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  28470484 ctatgaagcacggacactcctcggattaggcatgtcc 28470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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