View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10192_low_1 (Length: 400)

Name: NF10192_low_1
Description: NF10192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10192_low_1
NF10192_low_1
[»] chr5 (10 HSPs)
chr5 (14-230)||(9619108-9619324)
chr5 (267-385)||(9619322-9619440)
chr5 (10-136)||(19969331-19969457)
chr5 (17-165)||(1347676-1347824)
chr5 (272-359)||(8675715-8675803)
chr5 (14-159)||(20112128-20112273)
chr5 (25-145)||(13711898-13712018)
chr5 (16-139)||(19807082-19807205)
chr5 (18-159)||(26536172-26536313)
chr5 (207-238)||(17377689-17377720)
[»] chr6 (2 HSPs)
chr6 (302-383)||(16257866-16257947)
chr6 (18-90)||(16258249-16258321)
[»] scaffold0009 (3 HSPs)
scaffold0009 (22-80)||(34169-34227)
scaffold0009 (22-80)||(21922-21980)
scaffold0009 (22-80)||(40799-40857)
[»] chr3 (3 HSPs)
chr3 (40-90)||(32226768-32226818)
chr3 (303-380)||(32227796-32227873)
chr3 (18-83)||(32241837-32241902)
[»] chr1 (1 HSPs)
chr1 (14-69)||(26052813-26052868)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 9619108 - 9619324
Alignment:
Q  14 agaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctgattttcga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9619108 agaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaacattttacactatctagatgtggaacctgattttcga 9619207  T
Q  114 tttgcaaggtatatttttcagaatgcgagactactacaggatatgaaaatttaccctatatcttatagacccaaacgtgaactttatgaagaattatcct 213  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9619208 tttgcaaggtatatttttcagaatgcgagacttctacaggatatgaaaattcaccctatatcttatagacccaaacgtgaactttatgaagaattatcct 9619307  T
Q  214 cctgtccaaggatctct 230  Q
    |||||||||||||||||    
T  9619308 cctgtccaaggatctct 9619324  T

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Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 267 - 385
Target Start/End: Original strand, 9619322 - 9619440
Alignment:
Q  267 tctaattatacaaataaatggtcttctaattatagggtgcacttgataactgtgcaatgtatgttatgcttagcattttctgtaaccaaattgcttgagt 366  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9619322 tctaattatacaaataaatggtcttctaattatagggtgcacttaataactgtgcaatgtatgttatgcttagcattttctgtaaccaaattgcttgagt 9619421  T
Q  367 aaaataatttgtggctgtt 385  Q
    |||||||||||||||||||    
T  9619422 aaaataatttgtggctgtt 9619440  T

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Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 19969457 - 19969331
Alignment:
Q  10 gcagagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctgattt 109  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||  |||||| | |||||||||||||||  |||||||| || ||||||| |||||||    
T  19969457 gcagagacgattggaaatacccatatcatgttcccgaatgtgttttgtctcatcttacaacatgtaatattacacactatcaagctgtggaagctgattt 19969358  T
Q  110 tcgatttgcaaggtatatttttcagaa 136  Q
    ||||||||||| ||||||||| |||||    
T  19969357 tcgatttgcaacgtatattttgcagaa 19969331  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 1347824 - 1347676
Alignment:
Q  17 ggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctgattttcgattt 116  Q
    |||||||| ||||||| ||||||||||| |||||||||| |||||| | ||||||||||||||  ||||||||| || ||||||| ||||||| ||||||    
T  1347824 ggattggatatacccatatcatgttcctcaatgtgtttcctctcatcttacaacatgtaatatcatacactatcaagctgtggaagctgatttccgattt 1347725  T
Q  117 gcaaggtatatttttcagaatgcgagactactacaggatatgaaaattt 165  Q
    ||||  ||||| ||  ||||||| | |||  |||||| |||||| ||||    
T  1347724 gcaacctatatattgaagaatgcaaaactgttacaggttatgaatattt 1347676  T

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Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 272 - 359
Target Start/End: Original strand, 8675715 - 8675803
Alignment:
Q  272 ttatacaaat-aaatggtcttctaattatagggtgcacttgataactgtgcaatgtatgttatgcttagcattttctgtaaccaaattg 359  Q
    |||||||||| ||| ||||||| |||| ||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||    
T  8675715 ttatacaaatcaaacggtcttccaattctagggtgcacttgataactatgcaatatatgttttgcttagcattttctgtaaccaaattg 8675803  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 20112128 - 20112273
Alignment:
Q  14 agaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctgattttcga 113  Q
    |||| |||||||||||||| || ||||||||||||||||||  |||| | | ||||||||||| ||| ||  ||||  || | | |||| |||||||| |    
T  20112128 agagaattggaaatacccatatgatgttcctgaatgtgttttgtctcgtctcacaacatgtaacattgtaggctatgaagctttcgaacatgattttcaa 20112227  T
Q  114 tttgcaaggtatatttttcagaatgcgagactactacaggatatga 159  Q
    |||||||  |||||||| |||||||| ||||| ||||||| |||||    
T  20112228 tttgcaacatatattttgcagaatgcaagacttctacaggttatga 20112273  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 13712018 - 13711898
Alignment:
Q  25 aatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctgattttcgatttgcaaggta 124  Q
    |||||||  ||||||||||| || ||||||| |||||||||||||| |||   ||| || |||||  || ||||||| ||||||| |||||||||   ||    
T  13712018 aataccctgatcatgttcctaaaggtgtttcctctcatttaacaacttgtcgaattataaactatgaagttgtggaagctgatttccgatttgcagcata 13711919  T
Q  125 tatttttcagaatgcgagact 145  Q
    |||||| ||||||| ||||||    
T  13711918 tattttgcagaatgagagact 13711898  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 19807082 - 19807205
Alignment:
Q  16 aggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctgattttcgatt 115  Q
    ||||||||||| ||||| |||||||||||||||||||| | ||| || ||||||||||| | ||   | |||||| || | ||||| |||| |||| |||    
T  19807082 aggattggaaacacccatatcatgttcctgaatgtgttacctctaatctaacaacatgtgaaatcgaagactatcaagctatggaagctgactttcaatt 19807181  T
Q  116 tgcaaggtatatttttcagaatgc 139  Q
    |||||  |||||||| || |||||    
T  19807182 tgcaacatatattttgcaaaatgc 19807205  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 26536172 - 26536313
Alignment:
Q  18 gattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctgattttcgatttg 117  Q
    ||||||||||||||| |||||||||||||  |||||   |||||| | ||||||||||  ||| || |||||  || ||  ||| | |||||||||||||    
T  26536172 gattggaaatacccagatcatgttcctgagagtgttaggtctcatcttacaacatgtagcattataaactatgaagctgcagaagcggattttcgatttg 26536271  T
Q  118 caaggtatatttttcagaatgcgagactactacaggatatga 159  Q
    |||  ||||| ||  ||||||| |||||  ||||||||||||    
T  26536272 caatatatatcttgaagaatgctagacttgtacaggatatga 26536313  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 238
Target Start/End: Original strand, 17377689 - 17377720
Alignment:
Q  207 ttatcctcctgtccaaggatctctcccacatg 238  Q
    ||||||||||||||||||||||||||||||||    
T  17377689 ttatcctcctgtccaaggatctctcccacatg 17377720  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 383
Target Start/End: Complemental strand, 16257947 - 16257866
Alignment:
Q  302 ggtgcacttgataactgtgcaatgtatgttatgcttagcattttctgtaaccaaattgcttgagtaaaataatttgtggctg 383  Q
    |||||||||||||||| |||||||||||||   ||||  ||||| |||||||||||||||  |||| || ||||||||||||    
T  16257947 ggtgcacttgataactatgcaatgtatgtttctcttattattttatgtaaccaaattgctcaagtagaacaatttgtggctg 16257866  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 16258321 - 16258249
Alignment:
Q  18 gattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatc 90  Q
    ||||||||||||||| ||   |||||||| ||||||||||| |||||||||||||| || |||||| ||||||    
T  16258321 gattggaaatacccatatacggttcctgagtgtgtttcatcccatttaacaacatgcaaaattttagactatc 16258249  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 34169 - 34227
Alignment:
Q  22 ggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatatt 80  Q
    ||||||||| | ||||| ||||||||||||||||||||||| | ||||| |||||||||    
T  34169 ggaaataccgaaatcatattcctgaatgtgtttcatctcatcttacaacgtgtaatatt 34227  T

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Target: scaffold0009; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 21922 - 21980
Alignment:
Q  22 ggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatatt 80  Q
    ||||||||| | ||||| |||||||||||||||| |||||| | |||||||| ||||||    
T  21922 ggaaataccaagatcatattcctgaatgtgtttcgtctcatcttacaacatgcaatatt 21980  T

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Target: scaffold0009; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 40799 - 40857
Alignment:
Q  22 ggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatatt 80  Q
    ||||||||| | |||||||||||||||||||||| |||||| | ||||||  |||||||    
T  40799 ggaaataccaagatcatgttcctgaatgtgtttcgtctcatcttacaacaattaatatt 40857  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 32226768 - 32226818
Alignment:
Q  40 ttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatc 90  Q
    ||||||||||||||||||| |||||||||||||| || |||||| ||||||    
T  32226768 ttcctgaatgtgtttcatcccatttaacaacatgcaaaattttagactatc 32226818  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 380
Target Start/End: Original strand, 32227796 - 32227873
Alignment:
Q  303 gtgcacttgataactgtgcaatgtatgttatgcttagcattttctgtaaccaaattgcttgagtaaaataatttgtgg 380  Q
    ||||||||||||||| ||||||| |||||   ||||  ||||| ||||||||||||||| ||||| || |||||||||    
T  32227796 gtgcacttgataactatgcaatgaatgtttcacttaatattttatgtaaccaaattgctcgagtagaacaatttgtgg 32227873  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 32241902 - 32241837
Alignment:
Q  18 gattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatatttta 83  Q
    ||||||||| ||||| ||   |||||||| ||||||||||| |||||||||||||| || ||||||    
T  32241902 gattggaaacacccatatacggttcctgattgtgtttcatcccatttaacaacatgcaaaatttta 32241837  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 26052868 - 26052813
Alignment:
Q  14 agaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaa 69  Q
    |||| ||||| |||| ||| |||||||||| |||||||||||||||||| ||||||    
T  26052868 agagcattgggaatatccagatcatgttccagaatgtgtttcatctcatctaacaa 26052813  T

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