View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10192_low_10 (Length: 233)
Name: NF10192_low_10
Description: NF10192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10192_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 28465345 - 28465549
Alignment:
| Q |
13 |
caaaggccaaattgtacctgcccagacgaatattctccgattgattcaaataacatgtatgctggttgcataccaaattttcaagttatctgtcaagcag |
112 |
Q |
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| T |
28465345 |
caaaggccaaattgtacctgcccagacgaatattctccgattgattcaaataacatgtatgctggttgcataccaaattttcaagttatctgtcaagcag |
28465444 |
T |
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| Q |
113 |
gtgggaatttgagttcacaagataatctatatacaatgaaggagttaccaaatactgattggcctggatctgattatgaaaaaatatctccatctaattt |
212 |
Q |
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| T |
28465445 |
gtgggaatttgagttcacaagataatctatatacaatgaaggagttaccaaatactgattggcctggatctgattatgaaaaaatatctccatctaattt |
28465544 |
T |
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| Q |
213 |
acaag |
217 |
Q |
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||||| |
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| T |
28465545 |
acaag |
28465549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 28487112 - 28487316
Alignment:
| Q |
13 |
caaaggccaaattgtacctgcccagacgaatattctccgattgattcaaataacatgtatgctggttgcataccaaattttcaagttatctgtcaagcag |
112 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28487112 |
caaaggccaaattgtacctgcccagacgaatattcaccgattgattcaaataacatgtatgctggttgcataccaaattttcaagttatttgtcaagcag |
28487211 |
T |
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| Q |
113 |
gtgggaatttgagttcacaagataatctatatacaatgaaggagttaccaaatactgattggcctggatctgattatgaaaaaatatctccatctaattt |
212 |
Q |
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| T |
28487212 |
gtgggaatttgggtccacaagataatctatatacaatgaaggatttactaaatactgattggcctgcatctgattatgaatttagaattccatctaattt |
28487311 |
T |
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| Q |
213 |
acaag |
217 |
Q |
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||||| |
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| T |
28487312 |
acaag |
28487316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 28444496 - 28444681
Alignment:
| Q |
13 |
caaaggccaaattgtacctgcccagacgaatattctccgattgattcaaataacatgtatgctggttgcataccaaattttcaagttatctgtcaagcag |
112 |
Q |
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|||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| |||||||||| |
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| T |
28444496 |
caaaggcctaattgtacctgcccagttggatattctccgattgattcaaataacatgtatcttggttgcataccgaatttccaagttatttgtcaagcag |
28444595 |
T |
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| Q |
113 |
gtgggaatttgagttcacaagataatctatatacaatgaaggagttaccaaatactgattggcctggatctgattatgaaaaaata |
198 |
Q |
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|||| |||| | ||||||| | ||||||||||||||||||| || ||||||||||||||||| | |||||||||||||| |||| |
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| T |
28444596 |
gtggaaattgggattcacaaaaagatctatatacaatgaaggaattgccaaatactgattggccagaatctgattatgaaataata |
28444681 |
T |
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