View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10192_low_2 (Length: 380)
Name: NF10192_low_2
Description: NF10192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10192_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 42218081 - 42217719
Alignment:
| Q |
1 |
tgtgagggagaaagatagggatgcaatttaggaatcttagtttgtatgcccaaattccacatatcatatccctagtagattcttgtttcagcttccacaa |
100 |
Q |
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| T |
42218081 |
tgtgagggagaaagatagggatgcaatttaggaatcttagtttgtatgcccaaattacacatatcatatccctaggagattcttgttttagcttccacaa |
42217982 |
T |
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| Q |
101 |
tcttctagggtgctctctttcttgaacttcctttgttggtagttagggatgtttcatcacttgtggcctaagaaaatatcatcaaggattatttagaact |
200 |
Q |
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| T |
42217981 |
tcttctaggttgctctctttcttgaacttcctttgttggtagttagggatgtttcatcacttctggcatacgaaaatatcatcaaggattatttagaact |
42217882 |
T |
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| Q |
201 |
tatttaacttatctggtacataagtatttatattacatgtgatatttcactgaactgttttgagcttattttaataacccgtgcaaccgttttatgaata |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||| |
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| T |
42217881 |
tattgaacttatctggtacataagtatttatattacatgtgatatttcactgaactgttttgagcttatttttataagccgtccaaccgttttatgaata |
42217782 |
T |
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| Q |
301 |
agcacgtaattaagctcatgaattagaatcgatgttgttaaatagcagctatacggtgctact |
363 |
Q |
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| T |
42217781 |
agcatgtaattaagctcatgaattagaatcgatgttgttaaatagcagctatacggtgctact |
42217719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 172 - 345
Target Start/End: Complemental strand, 42185915 - 42185742
Alignment:
| Q |
172 |
gaaaatatcatcaaggattatttagaacttatttaacttatctggtacataagta-tttatattacatgtgatatttcactgaactgttttgagcttatt |
270 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| || |||||||||| | |||||||||| | ||||| |
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| T |
42185915 |
gaaaatatcatcaaggattatttagaacttattgaacttatctggtacataagtattttatattgca--tgatatttcaataaactgttttgggattatt |
42185818 |
T |
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| Q |
271 |
ttaataacccgtgc-aaccgttttatgaataagcacgtaattaagctcatgaattagaatcgatgttgttaaatag |
345 |
Q |
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||||||| || | | || ||||||||| ||| ||| |||||| ||||| |||||||||| |||||||||||||| |
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| T |
42185817 |
ttaataagccttccaaatacttttatgaacaagtacgaaattaatctcattaattagaatcaatgttgttaaatag |
42185742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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