View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10192_low_3 (Length: 350)
Name: NF10192_low_3
Description: NF10192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10192_low_3 |
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| [»] scaffold0122 (1 HSPs) |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 39437917 - 39438231
Alignment:
| Q |
19 |
actacaacatcataagatcaagaatcat---gtagtttacaaagtataccgacagcagataactcggattcaagtgtcttactctcgataactctccaag |
115 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
39437917 |
actacaacatcataagatcaagaatcatattgtagtttataaagtataccgacaacagataactcggattcaaatgtcttactctcgatacctctccaag |
39438016 |
T |
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| Q |
116 |
tactttgcatgcaacataatttgtgctatcggaaatagtgatttaattcccattaattgactttcattcaaattgatttggtgagattcaaaaacaaagg |
215 |
Q |
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| T |
39438017 |
ttctttgcatgcaacataatttgtgctatcggaaatggtgatttaattcccattaattgaatttcattcaaattgatttggtgagattcaaaaacaaatg |
39438116 |
T |
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| Q |
216 |
aattaattcccatttattcaattgattttttatatctttagaatgaggtattcaaccaacatag----tgtgacataaatggtagatattggactcctta |
311 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39438117 |
aattaattcctatttattcaattggttttttatatctttaaaatgaggtattcaaccaacatatataatgtgacataaatggtagatattggactcctta |
39438216 |
T |
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| Q |
312 |
ataattttatttagg |
326 |
Q |
| |
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|| |||||||||||| |
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| T |
39438217 |
atcattttatttagg |
39438231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 29092 - 29406
Alignment:
| Q |
19 |
actacaacatcataagatcaagaatcatgt---agtttacaaagtataccgacagcagataactcggattcaagtgtcttactctcgataactctccaag |
115 |
Q |
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|||||||||||||| ||||||| ||||||| ||||||||||||||||||||| || |||||||| |||||| |||||||||||| ||||||||||||| |
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| T |
29092 |
actacaacatcatacgatcaagtatcatgttttagtttacaaagtataccgacaacaaataactcgaattcaaatgtcttactctccataactctccaag |
29191 |
T |
|
| Q |
116 |
tactttgcatgcaacataatttgtgctatcggaaatagtgatttaattcccattaattgactttcattcaaattgatttggtgagattcaaaaacaaagg |
215 |
Q |
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| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29192 |
ttctttgcatgcaacataatttgtgctattggaaatagtgatttaattcccattaattgactttcattcaaattgatttagtgagattcaaaaacaaagg |
29291 |
T |
|
| Q |
216 |
aattaattcccatttattcaattgattttttatatctttagaatgaggtattcaaccaac----atagtgtgacataaatggtagatattggactcctta |
311 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
29292 |
aattaattcccatttatttaattgattttttatatcattaaaatgaggtattcaaccaacatatatagtgtgacataaatggtagatattgaactcctta |
29391 |
T |
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| Q |
312 |
ataattttatttagg |
326 |
Q |
| |
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|| ||||| |||||| |
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| T |
29392 |
atcattttgtttagg |
29406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 4077 - 4389
Alignment:
| Q |
19 |
actacaacatcataagatcaagaatcat---gtagtttacaaagtataccgacagcagataactcggattcaagtgtcttactctcgataactctccaag |
115 |
Q |
| |
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||||||| ||||||||||||||||| || ||||||||||||||||||| ||| || ||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
4077 |
actacaaaatcataagatcaagaattatattgtagtttacaaagtataccaacaacatataactcggattcaaatgtcttactctcgataactcttcaag |
4176 |
T |
|
| Q |
116 |
tactttgcatgcaacataatttgtgctatcggaaatagtgatttaattcccattaattgactttcattcaaattgatttggtgagattcaaaaacaaagg |
215 |
Q |
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| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4177 |
ttctttgcatgcaacataatttgtgctattggaaatagtgatttaattcccattaattgactttcattcaaattgatttggtgagattcaaaaacaaagg |
4276 |
T |
|
| Q |
216 |
aattaattcccatttattcaattgattttttatatctttagaatgaggtattcaacca----acatagtgtgacataaatggtagatattggactcctta |
311 |
Q |
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|||||||| |||||||| |||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| | |
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| T |
4277 |
aattaatt-tcatttatttaattga-tttttatatctttaaaatgaggtattcaaccaatatatatagtgtgacataaatggtagatattggactcctga |
4374 |
T |
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| Q |
312 |
ataattttatttagg |
326 |
Q |
| |
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|| ||||| |||||| |
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| T |
4375 |
atcattttgtttagg |
4389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 114 - 326
Target Start/End: Original strand, 14186780 - 14186996
Alignment:
| Q |
114 |
agtactttgcatgcaacataatttgtgctatcggaaatagtgatttaattcccattaattgactttcattcaaattgatttggtgagattcaaaaacaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14186780 |
agtactttgcatgcaacataatttgtgctatcggaaatagtgatttaattcccattaattgactttcattcaaattgatttggtgagattcaaaaacaaa |
14186879 |
T |
|
| Q |
214 |
ggaattaattcccatttattcaattgattttttatatctttagaatgaggtattcaaccaac----atagtgtgacataaatggtagatattggactcct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
14186880 |
ggaattaattcccatttattcaattgattttttatatctttaaaatgaggtattcaaccaacatatatagtgtgacataaatggtagatattggacttct |
14186979 |
T |
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| Q |
310 |
taataattttatttagg |
326 |
Q |
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||||||||||||||||| |
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| T |
14186980 |
taataattttatttagg |
14186996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 14186724 - 14186781
Alignment:
| Q |
19 |
actacaacatcataagatcaagaatca---tgtagtttacaaagtataccgacagcag |
73 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14186724 |
actacaacatcataagatcaagaatcatattgtagtttacaaagtataccgacagcag |
14186781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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