View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10192_low_4 (Length: 294)
Name: NF10192_low_4
Description: NF10192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10192_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 47436283 - 47436021
Alignment:
| Q |
16 |
acaatcaacttagaattgagaatgctagattaaaggttgaggtatatatacttttaaattgcttatttatagtctctactataaaacaatttannnnnnn |
115 |
Q |
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| T |
47436283 |
acaatcagcttagaattgagaatgctagattaaaggttgaggtatatatacttttaaattgcttatttatagtctctactataaaacaatttattttttt |
47436184 |
T |
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| Q |
116 |
aataatataatttacctccactgcactgtgtatataaaattgcttttatttctcattttattc--ttggttgaactaatggttatgcatgttttgttaat |
213 |
Q |
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| T |
47436183 |
aataatataatttacctccactgcactgtgtatataaaattgcttttatttctcattttcttctattggttgaactaatggttatgca--ttttgttaat |
47436086 |
T |
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| Q |
214 |
tgttttgtgtcttagattgaaatgttgacaggaaaggtaataaacgatgtagatgtagtgggttc |
278 |
Q |
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| T |
47436085 |
tcttttgtgtcttagattgaaatgttgacaggaaaggtaataaacgatgtagatgtagtgggttc |
47436021 |
T |
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