View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10193_low_1 (Length: 590)
Name: NF10193_low_1
Description: NF10193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10193_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 18 - 583
Target Start/End: Complemental strand, 37498009 - 37497457
Alignment:
| Q |
18 |
aagagtagcatagatatgattgtagttggaaataaacaatgaaaatgttatttgaatgaccaatgcctatccactagcccactcacgactgcaatttggg |
117 |
Q |
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| T |
37498009 |
aagagtagcatagatatgattgtagttggaaataaacaatgaaaatgttatttgaatgaccaatgcctatccactagcccactcacgactgcaatttggg |
37497910 |
T |
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| Q |
118 |
ttacaacatcaaggttttaatatctctggctgcgaattagaccttatcagccacatttgacagcaattctctacaatatcaatgatcgcaacagaaacca |
217 |
Q |
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| T |
37497909 |
ttacaacatcaaggttttaatatctctggctgcgaattagaccttatcagccacatttgacagcaattctctacaatatcaatgatcgcaacagaaacca |
37497810 |
T |
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| Q |
218 |
caatgaaaatcttagttgagccctagtatcaattttctccctccaaatttcttttatgaaaaatttgcacagtagttacagtttgcatagcgcaagaggc |
317 |
Q |
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| T |
37497809 |
caatgaaaatcttagttgagccctagtatcaattttctccctccaaatttcttttatgaaaaatttgcacagtagttacagtttgcatagcgcaagcggc |
37497710 |
T |
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| Q |
318 |
acaaaaaacatgcattcaagacacattttttgtccataatttaatttcagtatacaattgnnnnnnnggagttatttttattgggtgtagggagagggtg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| ||||| |
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| T |
37497709 |
acaaaaaacatgcattcaagacacattttttgtccataatttaatttcagtatacaattgaaaaaaagaagttatctttatt-------------gggtg |
37497623 |
T |
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| Q |
418 |
taaaaattaaagaatgataattataaaatcaaagttcattgataaagtagtattgtagaatgcagatacttgcctctttcagtggatctaacatactcaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37497622 |
taaaaattaaagaatgataattataaaatcaaagttcattgataaagtagtattgtagaatgcagataattgcctctttcagtggatctaacatactcaa |
37497523 |
T |
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| Q |
518 |
agaccaagnnnnnnncagactgagccagtgtatataaccaagagtacactttctcttcttcctttg |
583 |
Q |
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| T |
37497522 |
agaccaagtttttttcagactgagccagtgtatataaccaagagtacactttctcttcttcctttg |
37497457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 32618729 - 32618778
Alignment:
| Q |
160 |
cttatcagccacatttgacagcaattctctacaatatcaatgatcgcaac |
209 |
Q |
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| T |
32618729 |
cttatcagccgcatttgactgcaatactctacaatatcaaatatcgcaac |
32618778 |
T |
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