View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10193_low_10 (Length: 269)

Name: NF10193_low_10
Description: NF10193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10193_low_10
NF10193_low_10
[»] chr7 (4 HSPs)
chr7 (13-139)||(36724252-36724378)
chr7 (126-257)||(36723764-36723895)
chr7 (12-181)||(712145-712314)
chr7 (13-259)||(717356-717603)
[»] chr8 (1 HSPs)
chr8 (13-181)||(14541080-14541248)
[»] chr4 (1 HSPs)
chr4 (12-48)||(2087537-2087573)


Alignment Details
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 36724378 - 36724252
Alignment:
Q  13 tggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaattta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| | |||||||||    
T  36724378 tggacatcagaccttcaatttgataatacagatttttctctagactctgtgaaggatgtggatgctcttagaacaagcatataagatagtagtgaattta 36724279  T
Q  113 gatgcattatagatgcttgtagacagt 139  Q
    |||||||||||||||||||||||||||    
T  36724278 gatgcattatagatgcttgtagacagt 36724252  T

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Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 36723895 - 36723764
Alignment:
Q  126 tgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaataaagtcaggctaatgaggttgctcatgagttagctcagatagtcc 225  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| |||||| | ||||||| |||||||||||||||||||    
T  36723895 tgcttgtagacagttatttcatagtagatttcaaaactcttaagttgagtttaatagagtcagactaatgggattgctcacgagttagctcagatagtcc 36723796  T
Q  226 cacataatactaactcccacacctatgatgat 257  Q
    |||||||||||| ||| |||||||||||||||    
T  36723795 cacataatactagctctcacacctatgatgat 36723764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 712145 - 712314
Alignment:
Q  12 atggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaattt 111  Q
    |||||||||| |||||||||||||||||  ||||||| ||||||||| |  ||| | |||||||||| |||||||| |  || |||||| | ||||||||    
T  712145 atggacatcataccttcaatttgataatgtagattttgctctagactctaagaaggttgtggatgcttttagaacatgtgtagaagatagttgtgaattt 712244  T
Q  112 agatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata 181  Q
     |||| ||||||  ||| |||||| |||| ||||| | ||||||| ||||||||||  ||||||||||||    
T  712245 ggatgtattatacttgcatgtagatagttgtttcaaaatagattttaaaactctcatgttgagtttaata 712314  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 717356 - 717603
Alignment:
Q  13 tggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaattta 112  Q
    ||||||||| |||||||||||||||||  ||||||  ||||||||| |  ||| | ||| |||||| |||||| | |  ||  ||||| | ||||||||     
T  717356 tggacatcacaccttcaatttgataatgtagatttagctctagactctaagaaggttgttgatgcttttagaagatgtgtaggagatagtagtgaatttg 717455  T
Q  113 gatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata-aagtcaggctaatgaggttgctcatgagtt 211  Q
    |||| ||||||| ||  |||||||| ||||| || ||||||||||||||||||||  ||||||||||||  || || ||||||| | |  || | |||||    
T  717456 gatgtattatagttgaatgtagacaattattccaaagtagatttcaaaactctcatgttgagtttaataggagacaagctaatgggatcacttacgagtt 717555  T
Q  212 agctcagatagtcccacataatactaactcccacacctatgatgatgt 259  Q
    |||||| |||| |||||||||| |||  || | ||| |||||||||||    
T  717556 agctcatatagccccacataatgctagatctctcacttatgatgatgt 717603  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 14541080 - 14541248
Alignment:
Q  13 tggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaattta 112  Q
    ||||||||| |||||||||||||||||  | ||||||||||||||| |  |||   |||||||||| ||||||||    || |||||||| || ||||||    
T  14541080 tggacatcataccttcaatttgataatgtatatttttctctagactcttagaagattgtggatgcttttagaacatatgtagaagataatagtaaattta 14541179  T
Q  113 gatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata 181  Q
    |||| |||||||||| |||||||||  | ||||| ||||  ||| |||||||||  |||||||||||||    
T  14541180 gatgtattatagatgtttgtagacaagtgtttcaaagtaattttaaaaactctcgtattgagtttaata 14541248  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 2087573 - 2087537
Alignment:
Q  12 atggacatcagaccttcaatttgataatacagatttt 48  Q
    ||||||||||||||||||||||||||| | |||||||    
T  2087573 atggacatcagaccttcaatttgataaaatagatttt 2087537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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