View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10193_low_3 (Length: 352)

Name: NF10193_low_3
Description: NF10193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10193_low_3
NF10193_low_3
[»] chr4 (4 HSPs)
chr4 (13-334)||(2838500-2838821)
chr4 (13-151)||(2842784-2842922)
chr4 (287-338)||(2842522-2842573)
chr4 (155-189)||(2842671-2842705)


Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 334
Target Start/End: Complemental strand, 2838821 - 2838500
Alignment:
Q  13 atggacatcagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaagg 112  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2838821 atggaaatgagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaagg 2838722  T
Q  113 agaatctctttttggaaaaggaatttgaaagttataggccatcactttcatttgaaacttgtgatgatccatcacaggcagaaagcatcgtatcaaatgt 212  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2838721 agaatctctttttggaaaaggaacttgaaagttataggccatcactttcatttgaaacttgtgatgatccatcacaggcagaaagcatcgtatcaaatgt 2838622  T
Q  213 gaagaaagattgcgctgatgcagaccatggagaagaggtggaggaaaacagtcaacacaaggatcaagtgtgcaatgatatgcatagatccttttatgat 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2838621 gaagaaagattgcgctgatgcagaccatggagaagaggtggaggaaaacagtcaacacaaggatcaagcgtgcaatgatatgcatagatccttttatgat 2838522  T
Q  313 actgagtctgatgttcttgatg 334  Q
    ||||||||||||||||||||||    
T  2838521 actgagtctgatgttcttgatg 2838500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 2842922 - 2842784
Alignment:
Q  13 atggacatcagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaagg 112  Q
    ||||| || |||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2842922 atggaaatgagacaatacgagaggttaattgaagaaagagtttcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaggg 2842823  T
Q  113 agaatctctttttggaaaaggaatttgaaagttataggc 151  Q
    | ||||| ||||||||||||||| |||||| || |||||    
T  2842822 aaaatctttttttggaaaaggaacttgaaacttttaggc 2842784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 287 - 338
Target Start/End: Complemental strand, 2842573 - 2842522
Alignment:
Q  287 atgatatgcatagatccttttatgatactgagtctgatgttcttgatgtcca 338  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  2842573 atgatttgcatagctccttttatgatactgagtctgatgttcttgatgtcca 2842522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 2842705 - 2842671
Alignment:
Q  155 cactttcatttgaaacttgtgatgatccatcacag 189  Q
    |||||||||||||||| ||||||||||||||||||    
T  2842705 cactttcatttgaaacatgtgatgatccatcacag 2842671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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