View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10193_low_6 (Length: 297)
Name: NF10193_low_6
Description: NF10193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10193_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 281
Target Start/End: Original strand, 36375786 - 36376061
Alignment:
| Q |
6 |
gatggacatcacgagattgtgcagaaactgcaaaagaaaatggtgggctgtaccggttactctcttgaggttgagcttttgataacactcgggttaatac |
105 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36375786 |
gatgaacaacacgagattgtgcagaaactgcaaaagaaaatggtgggcagtaccggttactctcttgaggttgagcttttgataacactcgggtcaatac |
36375885 |
T |
|
| Q |
106 |
atccatggttgatcaaaacagcagaatcatgtgcagctaagtttttctccgaagaagagctagaaagactagaacaaaacaaatttgctttgagaaaagg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36375886 |
atccatggttgatcaaaacagcagaatcatgtgcagctaagtttttctccgaagaagagttagaaagactagaacaaaacaaatttgctttgagaaaagg |
36375985 |
T |
|
| Q |
206 |
ttccaaagtaagatttgttttgagcataatctcacgtgtgatgagaaaggaaaaggttctcatcttctgtcacaac |
281 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36375986 |
ttccaaagtaagatttgttttgagcctaatctcacgtgtgatgagaaaggaaaaggttctcatcttctgtcacaac |
36376061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 32249666 - 32249403
Alignment:
| Q |
18 |
gagattgtgcagaaactgcaaaagaaaatggtgggctgtaccggttactctcttgaggttgagcttttgataacactcgggttaatacatccatggttga |
117 |
Q |
| |
|
|||||||| |||||||| || |||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
32249666 |
gagattgtacagaaacttcagaagaaaatggccgagagtaccagttaccctcttgaggttgagcttttgataacactcggatcaatacatccatggttga |
32249567 |
T |
|
| Q |
118 |
tcaaaacagcagaatcatgtgcagctaagtttttctccgaagaagagctagaaagactagaacaaaacaaatttgctttgagaaaaggttccaaagtaag |
217 |
Q |
| |
|
|||||||||| | |||||||||| |||||||||| | || ||||| | | | ||||||| || |||||||| |||||||||| ||||||||||||| |
|
|
| T |
32249566 |
tcaaaacagctgcatcatgtgcaactaagttttttgcggaggaagaattgaagaaactagaaataagcaaatttgatttgagaaaaagttccaaagtaag |
32249467 |
T |
|
| Q |
218 |
atttgttttgagcataatctcacgtgtgatgagaaaggaaaaggttctcatcttctgtcacaac |
281 |
Q |
| |
|
||||||||||||| |||||||||| || ||| ||| ||||||||||| ||||| ||||||||| |
|
|
| T |
32249466 |
atttgttttgagcctaatctcacgagtagtgaaaaatgaaaaggttcttatcttttgtcacaac |
32249403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 67 - 265
Target Start/End: Original strand, 32192726 - 32192923
Alignment:
| Q |
67 |
ctcttgaggttgagcttttgataacactcgggttaatacatccatggttgatcaaaacagcagaatcatgtgcagctaagtttttctccgaagaagagct |
166 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||| | | |
|
|
| T |
32192726 |
ctcttgaggttgaaattttgataacactcgggtcgatacatccatagttgatcaaaacagcagccacatgtgcagcgaagtttttctccaaagaaaaatt |
32192825 |
T |
|
| Q |
167 |
agaaagactagaacaaaacaaatttgctttgagaaaaggttccaaagtaagatttgttttgagcataatctcacgtgtgatgagaaaggaaaaggttct |
265 |
Q |
| |
|
| ||||||||| || |||||| ||||| |||||||| ||| |||| |||| ||||||| ||||||||||||| | || ||| |||||| |||| |
|
|
| T |
32192826 |
gaagagactagaaggaagaaaattttacttgaggaaaggttctaaaataagttttg-tttgagcctaatctcacgtgtaacgaaaaatgaaaagattct |
32192923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 8844206 - 8843946
Alignment:
| Q |
18 |
gagattgtgcagaaactgcaaaagaaaatggtgggctgtaccggttactctcttgaggttgagcttttgataacactcgggttaatacatccatggttga |
117 |
Q |
| |
|
|||||| | ||||||||||| |||||||||| | ||||| |||||| |||||||||| ||||||||||||||||| || | |||||||||||||||| |
|
|
| T |
8844206 |
gagattttacagaaactgcagaagaaaatggctgagtgtactggttaccctcttgaggtagagcttttgataacacttggatcgatacatccatggttga |
8844107 |
T |
|
| Q |
118 |
tcaaaacagcagaatcatgtgcagctaagtttttctccgaagaagagctagaaagactagaacaaaacaaatttgctttgagaaaaggttccaaagtaag |
217 |
Q |
| |
|
||||||||||| | ||||||||| |||||||| | ||||| || | | || ||||| || |||||||| ||| ||||||||||||||| |||| |
|
|
| T |
8844106 |
tcaaaacagcaacagcatgtgcagagaagttttttgctgaagatgaattgaagaggctagacagaatcaaatttgatttaagaaaaggttccaaaataag |
8844007 |
T |
|
| Q |
218 |
atttgttttgagcataatctcacgtgtgatgagaaaggaaaaggttctcatcttctgtcac |
278 |
Q |
| |
|
||||||| ||||| ||||||||||||| ||| ||| ||||||||||| ||||| |||||| |
|
|
| T |
8844006 |
atttgttctgagcctaatctcacgtgtagtgaaaaatgaaaaggttcttatcttttgtcac |
8843946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 278
Target Start/End: Original strand, 8823674 - 8823923
Alignment:
| Q |
30 |
aaactgcaaaagaaaatggtgggctgtaccggttactctcttgaggttgagcttttgataacactcgggttaatacatccatggttgatcaaaacagcag |
129 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||||||||||||| ||| ||||||||||||| | | |||||||||||||||||||||| |||| |
|
|
| T |
8823674 |
aaactgcaaaagaaaatggctgagtgtaccagttactctcttgaggtagagattttgataacacttagatccatacatccatggttgatcaaaatagcaa |
8823773 |
T |
|
| Q |
130 |
aatcatgtgca-gctaagtttttctccgaagaagagctagaaagactagaacaaaacaaatttgctttgagaaaaggttccaaagtaagatttgttttga |
228 |
Q |
| |
|
| |||||||| ||| ||||| ||| ||||||| | |||| |||||| || | |||||| ||| || |||||||||||| |||||||| || ||| |
|
|
| T |
8823774 |
caacatgtgcatattaattttttttccaaagaagaattgaaaaggctagaaggaatcgaatttgatttaagtaaaggttccaaaataagattttttatga |
8823873 |
T |
|
| Q |
229 |
gcataatctcacgtgtgatgagaaaggaaaaggttctcatcttctgtcac |
278 |
Q |
| |
|
|| ||||||||| ||| ||| ||| ||||||||||| ||||| |||||| |
|
|
| T |
8823874 |
gcctaatctcacatgtagtgaaaaatgaaaaggttcttatcttttgtcac |
8823923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 8808317 - 8808065
Alignment:
| Q |
18 |
gagattgtgcagaaactgcaaaagaaaatggtgggctgtaccggttactctcttgaggttgagcttttgataacactcgggttaatacatccatggttga |
117 |
Q |
| |
|
|||||| | ||||||||||||||||||||| | | |||| | |||| ||||| || | ||| ||||||||||||| || | |||||||||||| ||| |
|
|
| T |
8808317 |
gagattttacagaaactgcaaaagaaaatgattgagtgtattgattaccctcttcag-tcgagattttgataacacttggatccatacatccatggctga |
8808219 |
T |
|
| Q |
118 |
tcaaaacagcagaatcatgtgcagctaagtttttctccgaagaagagctagaaagactagaacaaaacaaatttgctttgagaaaaggttccaaagtaag |
217 |
Q |
| |
|
||||||||||| | |||||||| ||||||||| || ||||||| | | || ||||||| || ||||||| |||||||||| ||||||| | | |
|
|
| T |
8808218 |
tcaaaacagcaacaacatgtgcatataagttttttgccaaagaagaattgaagaggctagaacgaatcaaatttaatttgagaaaaatttccaaaattaa |
8808119 |
T |
|
| Q |
218 |
atttgttttgagcataatctcacgtgtgatgagaaaggaaaaggttctcatctt |
271 |
Q |
| |
|
||||| | ||||| ||||||||| ||| ||| ||| ||| ||||||| ||||| |
|
|
| T |
8808118 |
atttggtctgagcctaatctcacctgtagtgaaaaatgaagaggttcttatctt |
8808065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University