View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10193_low_7 (Length: 297)
Name: NF10193_low_7
Description: NF10193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10193_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 285
Target Start/End: Original strand, 41964174 - 41964441
Alignment:
| Q |
14 |
gaaatgaggaagcttttgttgttagggttgagctgtgctaatcctgatagtgctgcaaggcctacaatgagaagggttttgcagattctcaacaatgaag |
113 |
Q |
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| T |
41964174 |
gaaatgacgaagcttttgttgttagggttgagctgtgctaatcctgatagtgctgcaaggcctacaatgagaagggttttgcagattctcaacaatgaag |
41964273 |
T |
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| Q |
114 |
ctatgcaatttgctgtgccaaaagtaaagccaaccttaactttctcatctgatttaccattgagtattcatgagattgtttctgatgatgatcttgatta |
213 |
Q |
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| T |
41964274 |
ctatgcaatttgctgtgccaaaagtaaagccaaccttaactttctcatctgatttaccattgagtattcatgagattgtttctgatgatgatcttgatta |
41964373 |
T |
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| Q |
214 |
tgaagagttcaatactagccagggtctatgtgtgagattttaaaattcactgaagagtttttgaacttgttc |
285 |
Q |
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| T |
41964374 |
tgaagagttcaatactagcca--gtctatgtgtgaga--ttaaaattcactgaaaagtttttgaacttgttc |
41964441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 285
Target Start/End: Original strand, 1225609 - 1225876
Alignment:
| Q |
14 |
gaaatgaggaagcttttgttgttagggttgagctgtgctaatcctgatagtgctgcaaggcctacaatgagaagggttttgcagattctcaacaatgaag |
113 |
Q |
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| T |
1225609 |
gaaatgaggaagcttttgttgttagggttgagctgtgctaatcctgatagtgctgcaaggcctacaatgagatgggttttgcagattctcaacaatgaag |
1225708 |
T |
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| Q |
114 |
ctatgcaatttgctgtgccaaaagtaaagccaaccttaactttctcatctgatttaccattgagtattcatgagattgtttctgatgatgatcttgatta |
213 |
Q |
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| T |
1225709 |
ctatgcaatttactgtgccaaaagtaaagccaaccttaactttctcatctgatttaccattgagtattcatgagattgtttctgatgatgatcttgatta |
1225808 |
T |
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| Q |
214 |
tgaagagttcaatactagccagggtctatgtgtgagattttaaaattcactgaagagtttttgaacttgttc |
285 |
Q |
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| T |
1225809 |
tgaagagttcaatactagcca--gtctatgtgtgaga--ttaaaattcactgaaaagtttttgaacttgttc |
1225876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 23915477 - 23915557
Alignment:
| Q |
35 |
ttagggttgagctgtgctaatcctgatagtgctgcaaggcctacaatgagaagggttttgcagattctcaacaatgaagct |
115 |
Q |
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| T |
23915477 |
ttagggttaagttgtgcaaatccaaatagtgatgaaaggccttctatgagaagagttttgcaaattcttaacaatgaagct |
23915557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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