View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10194_high_2 (Length: 336)
Name: NF10194_high_2
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10194_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 42286544 - 42286233
Alignment:
| Q |
18 |
cttatatagcttttttgtaaaagaaattcagagccctaactcatgttcatgatttagggtttcattatgcttgttttttgagaaaataatacnnnnnnnn |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42286544 |
cttatatagcttttttgtaaaagaaattcagagccctaactcatgttcatgatttagggtttcattatgcttgttttttgagaaaataatacaaaaaaaa |
42286445 |
T |
|
| Q |
118 |
nnnnnnnnnn---ttcgagaagggtgtgtgcatgttgaagttttaagtaataatgaaaataaaaataattaagctacttgcttggtgttccaggttgatt |
214 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42286444 |
aaaaaaaaaaaaattcgagaagggtgtgtgcatgttgaagctttaagtaataatgaaaataaaaataattaagctacttgcttggtgttccaggttgatt |
42286345 |
T |
|
| Q |
215 |
ccttcttttcttttgaggaactgtggttgaaggagctgaggaagtagcagaagtagtagttgattgaggatgaggatgatgatgtgttatttgactttga |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42286344 |
ccttcttttcttttgaggaactgtggttgaaggagctgaggaagtagcagaagtagtagttgattgaggatgaggatgatgatgtgttatttgactttga |
42286245 |
T |
|
| Q |
315 |
ttttcttctctg |
326 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42286244 |
ttttcttctctg |
42286233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 12805364 - 12805411
Alignment:
| Q |
189 |
tacttgcttggtgttccaggttgattccttcttttcttttgaggaact |
236 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
12805364 |
tacttgcatggtgttccaggttgatttcttctttttttctgaggaact |
12805411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University