View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10194_low_1 (Length: 562)
Name: NF10194_low_1
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10194_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 12 - 547
Target Start/End: Complemental strand, 40841501 - 40840966
Alignment:
| Q |
12 |
ataggttcctagacttgcgtcaatggccagcatatatatgccaaccttgccatgccaagaatgaaaatgacaaatggagaaaggaagtggtaagaaacta |
111 |
Q |
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| T |
40841501 |
ataggttcctagacttgcgtcaatggccagcatatatatgccaaccttgccatgccaagaatgaaaatgaaaaatggaaaaaggaagtggtaagaaacta |
40841402 |
T |
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| Q |
112 |
agaatatgggtgcataaaactagattgatgtgatgctttctacaagttgcttgtatacatctcaagttcattgtgtgctggtgcaatgcataaccatggg |
211 |
Q |
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| T |
40841401 |
agaatatgggtgcataaaactagattgatgtgatgctttctacaagttgcttgtatacatctcaagttcattgtgtgctggtgcaatgcataaccatggg |
40841302 |
T |
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| Q |
212 |
tattttgtaagaaactaatgacattgtataattttacatatagattcgagttccttattgttcggttatgagaggagtcctaaaatattgtatgtttatc |
311 |
Q |
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| T |
40841301 |
tattttgtaagaaactaatgacattgtataattttacacatagattcgagttccttattgttcgattatgagaggagtcctaaaatattgtatgtttatc |
40841202 |
T |
|
| Q |
312 |
atgttgaattttgaacaacgacatgtaagagaaattaaacaccacatattaactctaaaatgataattttcatttctaaatatgtgacacaatgtcaata |
411 |
Q |
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| T |
40841201 |
atgttgaattttgaacaacaacatgtaagagaaattaaacaccacatattaactttaaaatgataattttcatttctaaatatgtgtcacaatgtcaata |
40841102 |
T |
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| Q |
412 |
tataatctttgaattgactaaattatatataaaaagggtagtactattcctcgtgaagcatatcatcatgaacatttcacgaagtgctgtgccaccgtta |
511 |
Q |
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| T |
40841101 |
tataatctttgaattgactaaattatatataaaaagggtagtactattcctcgtgaagcatatcatcatgaacatttcacgaagtgctctgccaccgtta |
40841002 |
T |
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| Q |
512 |
gattaaaagcaaaatagtcttccacaatcatgcttt |
547 |
Q |
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| T |
40841001 |
gattaaaagcaaaatagtcttccacaatcatgcttt |
40840966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 447 - 500
Target Start/End: Complemental strand, 5891902 - 5891849
Alignment:
| Q |
447 |
gggtagtactattcctcgtgaagcatatcatcatgaacatttcacgaagtgctg |
500 |
Q |
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| T |
5891902 |
gggtagtgctattcctcgcgaaacatatcatcacgaacatttcacgaagtgctg |
5891849 |
T |
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