View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10194_low_10 (Length: 352)
Name: NF10194_low_10
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10194_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 31202136 - 31201807
Alignment:
| Q |
10 |
gcataggccagtttaccatcagtagaaacaatcagaggaaatgcctggttaggtggcaagtttacaaaaagactggctccctaataatagaattcaaaat |
109 |
Q |
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| T |
31202136 |
gcattggccagtttaccatcagtagaaacaatcagaggaaatgcctggttaggtggcaagtttacaaaaagactggctccctaataatagaattcaaaat |
31202037 |
T |
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| Q |
110 |
taagtattataacttaataataacacagcaataagagtaaaaaattattacaacaataagaagaggaataatgagattcaagatgacatataccatcact |
209 |
Q |
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| T |
31202036 |
taagtattataacttaataataacacaacaataagagtaaaaaattattacaacaataagaagaggaataatgagattcaagatgacatataccatcact |
31201937 |
T |
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| Q |
210 |
tgttaattgtcgctaaaagttatagtataataatgaatcaacagcaataataacaataaatttgtcnnnnnnntaataatcagaatattaagaatgatac |
309 |
Q |
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| T |
31201936 |
tgttaattgtcgctaaaagttatagtataataatgaatcaacagcaataataacaataaatttgtcaaaaaaataataatcagaatattaagaatgatac |
31201837 |
T |
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| Q |
310 |
cctgattgttttgttaccaatggttatggt |
339 |
Q |
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| T |
31201836 |
cctgattgtttggttaccaatggttatggt |
31201807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 31108251 - 31108289
Alignment:
| Q |
53 |
cctggttaggtggcaagtttacaaaaagactggctccct |
91 |
Q |
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| T |
31108251 |
cctggttaggtggcaagtttacaaaaagactggctccct |
31108289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 31145995 - 31146032
Alignment:
| Q |
55 |
tggttaggtggcaagtttacaaaaagactggctcccta |
92 |
Q |
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| T |
31145995 |
tggttaggtggcaagtttacaaaaagactggctcccta |
31146032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 31163819 - 31163856
Alignment:
| Q |
55 |
tggttaggtggcaagtttacaaaaagactggctcccta |
92 |
Q |
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| T |
31163819 |
tggttaggtggcaagtttacaaaaagactggctcccta |
31163856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 31063184 - 31063225
Alignment:
| Q |
54 |
ctggttaggtggcaagtttacaaaaagactggctccctaata |
95 |
Q |
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| T |
31063184 |
ctggttaggtggtaagtctacaaaaagactggctccctaata |
31063225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 31050725 - 31050769
Alignment:
| Q |
54 |
ctggttaggtggcaagtttacaaaaagactggctccctaataata |
98 |
Q |
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|||||||||||| |||||||||||||| ||||||||||| ||||| |
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| T |
31050725 |
ctggttaggtggtaagtttacaaaaaggctggctccctagtaata |
31050769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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