View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10194_low_12 (Length: 323)

Name: NF10194_low_12
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10194_low_12
NF10194_low_12
[»] chr8 (1 HSPs)
chr8 (20-314)||(45347651-45347946)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 45347651 - 45347946
Alignment:
Q  20 gatggtagttaatcatgaatcattttgacttgtttctattttttgcagtgtnnnnnnnnnnnnnnnnn-ttaacttaagggagagggagagagatatatg 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||    
T  45347651 gatggtagttaatcatgaatcattctgacttgtttctattttttgcagtgtaaaaggaaaaagaaaaaattaacttaagggagagggagagagatatatg 45347750  T
Q  119 gtaggttcgacacataacggagggggagatagcggtaagtcattgatggaagacctcctcggacttctaaggatccacattaagcgtggcgtcaacctcg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45347751 gtaggttcgacacataacggagggggagatagcggtaagtcattgatggaagacctcctcggacttctaaggatccgcattaagcgtggcgtcaacctcg 45347850  T
Q  219 ccgttcgtgatgttaatactagtgatccatatgccgtcgttaagatgggcaagcaggttatctttctatttccatcatcctaagttccttcctttg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45347851 ccgttcgtgatgttaatactagtgatccatatgccgtcgttaagatgggcaagcaggttatctttctatttccatcatcctaagttccttcctttg 45347946  T

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