View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10194_low_14 (Length: 283)
Name: NF10194_low_14
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10194_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 13992 - 13740
Alignment:
| Q |
17 |
gaataccccattttcaacaattccaatgagtcgacggagaagtaatcaccacatcgacattgataaaacagttctaatgcttcatcggcatcttcaactg |
116 |
Q |
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| T |
13992 |
gaataccccattttcaacaattccaatgagtcgacggagaagtaatcaccacatcgacattgataaaacagttctaatgcttcatcggcatcttcaactg |
13893 |
T |
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| Q |
117 |
tcatatcatgtaagcttaaatcttctgcgacttcggcagccaatgcatcacgccttgatctttgaagctccttgtcatataacaaacgagagcttgaatt |
216 |
Q |
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| T |
13892 |
tcatatcatgaaagcttaaatcttctgcgacttcggcagccaatgcatcacgccttgatctttgaagctccttgtcatataacaaacgagagcttgaatt |
13793 |
T |
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| Q |
217 |
gcttagaatttcccaggccttttgtactttgagaaatctctctgaagttcttt |
269 |
Q |
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| T |
13792 |
gcttagaatttcccaggccttttgtactttgagaaatctctctgaagttcttt |
13740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 879007 - 878759
Alignment:
| Q |
17 |
gaataccccattttcaacaattccaatgagtcgacggagaagtaatcaccacatcgacattgataaaacagttctaatgcttcatcggcatcttcaactg |
116 |
Q |
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| T |
879007 |
gaataccccattttcaacaattccaatgagtcgacggagaagtaatcaccacatcgacattgataaaacagttctaatgcttcatcggcatcttcaactg |
878908 |
T |
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| Q |
117 |
tcatatcatgtaagcttaaatcttctgcgacttcggcagccaatgcatcacgccttgatctttgaagctccttgtcatataacaaacgagagcttgaatt |
216 |
Q |
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| T |
878907 |
tcatatcatgtaagcttaaatcttctgcgacttcggcagccaatgcatcacgccttgatctttgaagctccttgtcatataacaaacgagagcttgaatt |
878808 |
T |
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| Q |
217 |
gcttagaatttcccaggccttttgtactttgagaaatctctctgaagtt |
265 |
Q |
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| T |
878807 |
gcttagaatttcccaggccttttgtactttgagaaatctctctgaagtt |
878759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 28407924 - 28407673
Alignment:
| Q |
17 |
gaataccccattttcaacaattccaatgagtcgacggagaagtaatcaccacatcgacattgataaaacagttctaatgcttcatcggcatcttcaactg |
116 |
Q |
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||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||| |||| |||| | ||||||||||| | |
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| T |
28407924 |
gaataccccattttctacaattccaatgagtctacagagaagtaatcaccacatcgacactgataaaacaattccaatgtttcaccagcatcttcaacag |
28407825 |
T |
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| Q |
117 |
tcatatcatgtaagcttaaatcttctgcgacttcggcagcc---aatgcatcacgccttgatctttgaagctccttgtcatataacaaacgagagcttga |
213 |
Q |
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||||||| ||||| ||||| |||||||| ||||| | |||| || | || ||||| || |||| || ||||||||||| | ||||||||| |||| |
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| T |
28407824 |
tcatatcctgtaaccttaactcttctgcaacttcagaagccaagaaatcctcccgcctcgaactttttagttccttgtcataaattaaacgagaggttga |
28407725 |
T |
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| Q |
214 |
attgcttagaatttcccaggccttttgtactttgagaaatctctctgaagtt |
265 |
Q |
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|||||||||||||||||| ||||| || |||||||||||||||||||||||| |
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| T |
28407724 |
attgcttagaatttcccatgccttgtgaactttgagaaatctctctgaagtt |
28407673 |
T |
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