View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10194_low_15 (Length: 281)

Name: NF10194_low_15
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10194_low_15
NF10194_low_15
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-271)||(40909-41180)
[»] chr1 (15 HSPs)
chr1 (1-271)||(24233915-24234185)
chr1 (1-72)||(23896872-23896943)
chr1 (146-221)||(25477989-25478064)
chr1 (9-189)||(24512303-24512483)
chr1 (129-222)||(24222558-24222651)
chr1 (4-50)||(25869443-25869489)
chr1 (9-74)||(25611720-25611785)
chr1 (15-50)||(25477861-25477896)
chr1 (9-55)||(24635555-24635601)
chr1 (136-189)||(24247158-24247211)
chr1 (196-271)||(23896688-23896763)
chr1 (4-55)||(45693628-45693679)
chr1 (2-47)||(24247294-24247339)
chr1 (9-74)||(51763655-51763720)
chr1 (4-40)||(51221950-51221986)
[»] chr7 (1 HSPs)
chr7 (1-271)||(1421701-1421971)
[»] chr5 (1 HSPs)
chr5 (2-72)||(3180969-3181039)
[»] chr4 (1 HSPs)
chr4 (4-72)||(11032173-11032241)
[»] chr3 (1 HSPs)
chr3 (12-40)||(1891801-1891829)


Alignment Details
Target: scaffold0015 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 41180 - 40909
Alignment:
Q  1 aattccgctgcgtctgcaagtcatggaattctctaatctcaaatgatcctaaattcatcaaaaaa-caccttcgcatgatgtcaacaaccaaacgccacc 99  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  41180 aattccgttgcgtctgcaagtcatggaattctctaatctcaaatgatcctaaatttatcaaaaaaacaccttcgcatgatgtcaacaaccaaacgccacc 41081  T
Q  100 acctcgtcacaaccacatggatgatggcaaaagagctaactgtaatgtcttatccattcgactctcttcaactcgactctattttcacctgtaatcccac 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  41080 acctcgtcacaaccacatggatgatggcaaaagagctaactgtaatgtcttatccattcgactctcttcaactcgactctatttttacctctaatcccac 40981  T
Q  200 acagctcgattactctcccattattacatcatggagggatggtctcattgcttcatgcgacggtctcctttg 271  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40980 acagctcgattcctctcccattattacatcatggagggatggtctcattgcttcatgcgacggtctcctttg 40909  T

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Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 24234185 - 24233915
Alignment:
Q  1 aattccgctgcgtctgcaagtcatggaattctctaatctcaaatgatcctaaattcatcaaaaaacaccttcgcatgatgtcaacaaccaaacgccacca 100  Q
    |||||||||| ||||| |||||||||||||| || ||||| |||||||||||||||| |||||||||||||| |||||||||||||||||| | || |||    
T  24234185 aattccgctgtgtctgtaagtcatggaattcgcttatctctaatgatcctaaattcaccaaaaaacaccttcacatgatgtcaacaaccaagcaccgcca 24234086  T
Q  101 cctcgtcacaaccacatggatgatggcaaaagagctaactgtaatgtcttatccattcgactctcttcaactcgactctattttcacctgtaatcccaca 200  Q
    |||||| |||||||||||||| |||||||||||| ||||||| |  ||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  24234085 cctcgttacaaccacatggatcatggcaaaagagttaactgtgacttcttatccattcgactctcttcaactcgactctattttcacttctaatcccaca 24233986  T
Q  201 cagctcgattactctcccattattacatcatggagggatggtctcattgcttcatgcgacggtctcctttg 271  Q
    || ||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||    
T  24233985 caactcgattactctcccattattacatcatggcaggatggcctcattgcttcatgcgacggtctcctttg 24233915  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 23896943 - 23896872
Alignment:
Q  1 aattccgctgcgtctgcaagtcatggaattctctaatctcaaatgatcctaaattcatcaaaaaacaccttc 72  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||  |||||| |||| ||||||||||    
T  23896943 aattccgctgcgtctgcaagtcatggaattctctaatctcgaaggatcagaaattcttcaagaaacaccttc 23896872  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 25477989 - 25478064
Alignment:
Q  146 gtcttatccattcgactctcttcaactcgactctattttcacctgtaatcccacacagctcgattactctcccatt 221  Q
    |||||| ||| ||||||||||||| |||||| |||||||||||| |||||||||||| ||||||||||||| ||||    
T  25477989 gtcttacccactcgactctcttcatctcgacgctattttcacctctaatcccacacaactcgattactctctcatt 25478064  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 189
Target Start/End: Original strand, 24512303 - 24512483
Alignment:
Q  9 tgcgtctgcaagtcatggaattctctaatctcaaatgatcctaaattcatcaaaaaacaccttcgcatgatgtcaacaaccaaacgccaccacctcgtca 108  Q
    |||||||||||||||||||||||||| |||||||| ||||   |||||  ||||||| |||||||||||   ||||||||||||||| | ||||| ||||    
T  24512303 tgcgtctgcaagtcatggaattctctgatctcaaaagatctcgaattcgccaaaaaataccttcgcatg---tcaacaaccaaacgcaaacaccttgtca 24512399  T
Q  109 caaccacatggat--gatggcaaaa-gagctaactgtaatgtcttatccattcgactctcttcaactcgactctattttcacct 189  Q
    ||  |||||||||  |||   || | ||| | | | | |||||||||||| |||| |||||||||||  |||||||||||||||    
T  24512400 catgcacatggatccgatctaaagatgagtttagtatgatgtcttatccactcgattctcttcaacttcactctattttcacct 24512483  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 24222651 - 24222558
Alignment:
Q  129 aaagagctaactgtaatgtcttatccattcgactctcttcaactcgactctattttcacctgtaatcccacacagctcgattactctcccatta 222  Q
    |||||| | |||||||| ||||| ||| |||| |||||||||||  ||||||||||||||  |||||||||||| || |||||||||| |||||    
T  24222651 aaagagtttactgtaatatcttacccactcgattctcttcaactacactctattttcaccactaatcccacacaacttgattactctctcatta 24222558  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 25869489 - 25869443
Alignment:
Q  4 tccgctgcgtctgcaagtcatggaattctctaatctcaaatgatcct 50  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||    
T  25869489 tccgctgcatttgcaagtcatggaattctctaatctcaaatgatcct 25869443  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 25611785 - 25611720
Alignment:
Q  9 tgcgtctgcaagtcatggaattctctaatctcaaatgatcctaaattcatcaaaaaacaccttcgc 74  Q
    ||||||||||||||||||||||||||||| || |||||||| || ||  |||| ||||||||||||    
T  25611785 tgcgtctgcaagtcatggaattctctaatatcgaatgatcccaattttgtcaagaaacaccttcgc 25611720  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 25477861 - 25477896
Alignment:
Q  15 tgcaagtcatggaattctctaatctcaaatgatcct 50  Q
    ||||||||||||||||||||||||||||||||||||    
T  25477861 tgcaagtcatggaattctctaatctcaaatgatcct 25477896  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 24635601 - 24635555
Alignment:
Q  9 tgcgtctgcaagtcatggaattctctaatctcaaatgatcctaaatt 55  Q
    |||||||||||||||||||||||||| |||||||| |||||| ||||    
T  24635601 tgcgtctgcaagtcatggaattctctgatctcaaaagatcctgaatt 24635555  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 24247211 - 24247158
Alignment:
Q  136 taactgtaatgtcttatccattcgactctcttcaactcgactctattttcacct 189  Q
    |||||||||||||||| ||||| |||||| |||||||| |||||| ||||||||    
T  24247211 taactgtaatgtcttacccattggactcttttcaactcaactctagtttcacct 24247158  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 23896763 - 23896688
Alignment:
Q  196 ccacacagctcgattactctcccattattacatcatggagggatggtctcattgcttcatgcgacggtctcctttg 271  Q
    ||||||| ||||||||||||||||||| ||||   || | |||| | ||||||||||| |||||||||||| ||||    
T  23896763 ccacacaactcgattactctcccattaatacagattgtatggatcgactcattgcttcttgcgacggtctcatttg 23896688  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 45693679 - 45693628
Alignment:
Q  4 tccgctgcgtctgcaagtcatggaattctctaatctcaaatgatcctaaatt 55  Q
    |||||||| | |||||||| ||||||||||||||||||| |||||| |||||    
T  45693679 tccgctgcatatgcaagtcgtggaattctctaatctcaattgatcccaaatt 45693628  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 24247339 - 24247294
Alignment:
Q  2 attccgctgcgtctgcaagtcatggaattctctaatctcaaatgat 47  Q
    ||||||||||||||||||||  ||||||||||| ||||||| ||||    
T  24247339 attccgctgcgtctgcaagttgtggaattctctcatctcaattgat 24247294  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 51763720 - 51763655
Alignment:
Q  9 tgcgtctgcaagtcatggaattctctaatctcaaatgatcctaaattcatcaaaaaacaccttcgc 74  Q
    |||||||||||||||||||||||||| ||||   ||||| || |||||| ||| || |||||||||    
T  51763720 tgcgtctgcaagtcatggaattctcttatctgtcatgattctgaattcaccaagaagcaccttcgc 51763655  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 51221986 - 51221950
Alignment:
Q  4 tccgctgcgtctgcaagtcatggaattctctaatctc 40  Q
    |||||||| |||||||||||||||||||||| |||||    
T  51221986 tccgctgcatctgcaagtcatggaattctcttatctc 51221950  T

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Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 1421971 - 1421701
Alignment:
Q  1 aattccgctgcgtctgcaagtcatggaattctctaatctcaaatgatcctaaattcatcaaaaaacaccttcgcatgatgtcaacaaccaaacgccacca 100  Q
    ||||||| |||||||| ||||| ||||||| |||||||||||||||||| ||||||  |||||||||||||| |||||||||||||||||||| |||| |    
T  1421971 aattccgttgcgtctgtaagtcgtggaattttctaatctcaaatgatcccaaattcgccaaaaaacaccttcacatgatgtcaacaaccaaacaccacta 1421872  T
Q  101 cctcgtcacaaccacatggatgatggcaaaagagctaactgtaatgtcttatccattcgactctcttcaactcgactctattttcacctgtaatcccaca 200  Q
    |||| |||||||||||||||| || ||||||||| ||   |||||||||||||||||||| ||||||||||||||||| ||||||||||  |||||||||    
T  1421871 cctcctcacaaccacatggatcatcgcaaaagagttagaggtaatgtcttatccattcgattctcttcaactcgactcaattttcacctccaatcccaca 1421772  T
Q  201 cagctcgattactctcccattattacatcatggagggatggtctcattgcttcatgcgacggtctcctttg 271  Q
    || ||||||||||||||||||||| || |||  |  ||||| ||| ||||||| |||||||||||||||||    
T  1421771 caactcgattactctcccattattccaacatccaacgatggcctcgttgcttcttgcgacggtctcctttg 1421701  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 3180969 - 3181039
Alignment:
Q  2 attccgctgcgtctgcaagtcatggaattctctaatctcaaatgatcctaaattcatcaaaaaacaccttc 72  Q
    ||||||||| || ||||| ||||||||||||||||||||||  ||||| ||||||  ||||||||||||||    
T  3180969 attccgctgtgtatgcaattcatggaattctctaatctcaaccgatcccaaattcgccaaaaaacaccttc 3181039  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 11032173 - 11032241
Alignment:
Q  4 tccgctgcgtctgcaagtcatggaattctctaatctcaaatgatcctaaattcatcaaaaaacaccttc 72  Q
    |||||||||| ||||| ||||||||| ||||||||||| |||||   |  ||| |||||||||||||||    
T  11032173 tccgctgcgtatgcaaatcatggaatactctaatctcagatgatagcagtttcgtcaaaaaacaccttc 11032241  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 1891829 - 1891801
Alignment:
Q  12 gtctgcaagtcatggaattctctaatctc 40  Q
    |||||||||||||||||||||||||||||    
T  1891829 gtctgcaagtcatggaattctctaatctc 1891801  T

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