View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10194_low_16 (Length: 277)
Name: NF10194_low_16
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10194_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 44430444 - 44430695
Alignment:
| Q |
18 |
aagagaaagtctagcctttggacttatgttgtttctcatatgtatgtataaacaaacaaaacttttcttcaagtggggtttgtgctgcaaagtttagtgg |
117 |
Q |
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| T |
44430444 |
aagagaaagtctagcctttggacttatgttgtttctcatatg----tataaacaaacaaaacttttcttcaagtggggtttgtgctgcaaagtttagtgg |
44430539 |
T |
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| Q |
118 |
caactaagaaatcataagagagggaagttagtttgaaaagctagcatactttttcttgtcaattctaatttgaaatccagtttaacatacgctttagctc |
217 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44430540 |
caactaagaaatcataagagagggaagttagattgaaaagctagcatactttttcttgtcaattctaatttgaaatccagtttaacatacgctttagctc |
44430639 |
T |
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| Q |
218 |
ggtgataaaagtataacattgtaacctcaagagacagacagtgtgttcaaatcccctcga |
277 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44430640 |
ggtgataaaagtataacattgtaacctcaag----agacagtgtgttcaaatcccctcga |
44430695 |
T |
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