View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10194_low_17 (Length: 254)
Name: NF10194_low_17
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10194_low_17 |
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| [»] chr6 (7 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 12949447 - 12949687
Alignment:
| Q |
13 |
gagaagaactgatattcttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttc |
112 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12949447 |
gagatgaactgatattcttatatgcttatttgaatcataaccaactcattaattgcttatgaaattagaattttatttttatcatcttattgtgcatttc |
12949546 |
T |
|
| Q |
113 |
aaaattcccaaactacaaaagataatggtattaatggccttctgtattttaatttcaggtcatgaacaaaatttctaagtcatttgtggaaagagaagtt |
212 |
Q |
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|||||||| | ||||||||| ||||||||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12949547 |
aaaattcctagactacaaaatataatggtaataatgaccttcttgattttaatttcaggtcttgaacaaaatttctaagtcatttgtggaaagagaagtt |
12949646 |
T |
|
| Q |
213 |
atgcgacataatgtactttggttaagaaaatgaatggtcagc |
254 |
Q |
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|||| ||||||||||| | | |||||||||||||||||||| |
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| T |
12949647 |
atgcagcataatgtactct-gctaagaaaatgaatggtcagc |
12949687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 12908018 - 12908260
Alignment:
| Q |
13 |
gagaagaactgatattcttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttc |
112 |
Q |
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|||| |||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| || ||||| |
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| T |
12908018 |
gagatgaactgatattcctatatctttattagaatcataactacgtcattaattgcttatggaattagagttttatttttatcatcttattttgtatttc |
12908117 |
T |
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| Q |
113 |
aaaattcccaaactacaaaagataatggtattaatggccttctgtattttaatttca-ggtcatgaacaaaatttctaagtcatttgtggaaagagaagt |
211 |
Q |
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|||||||||||||||||||| ||||||||| ||||| |||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
12908118 |
aaaattcccaaactacaaaatataatggtaataatgaccttcttgattttaatttcagggtcttgaacaaaatttctaagtcatttgtggaaagagaaga |
12908217 |
T |
|
| Q |
212 |
tatgcgacataatgtactttggttaagaaaatgaatggtcagc |
254 |
Q |
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||||| ||||| |||||||||||||||||||||||| ||||| |
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| T |
12908218 |
tatgcagcataacgtactttggttaagaaaatgaatgttcagc |
12908260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 12933107 - 12933349
Alignment:
| Q |
13 |
gagaagaactgatattcttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttc |
112 |
Q |
| |
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|||| |||||||||||| ||||| |||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| || ||||| |
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| T |
12933107 |
gagatgaactgatattcctatatctttattagaatcataactacgtcattaattgcttaaggaattagagttttatttttatcatcttattttgtatttc |
12933206 |
T |
|
| Q |
113 |
aaaattcccaaactacaaaagataatggtattaatggccttctgtattttaatttca-ggtcatgaacaaaatttctaagtcatttgtggaaagagaagt |
211 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||||| |||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
12933207 |
aaaattcccaaactacaaaatataatggtaataatgaccttcttgattttaatttcagggtcttgaacaaaatttctaagtcatttgtggaaagagaaga |
12933306 |
T |
|
| Q |
212 |
tatgcgacataatgtactttggttaagaaaatgaatggtcagc |
254 |
Q |
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||||| ||||| |||||||||||||||||||||||| ||||| |
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| T |
12933307 |
tatgcagcataacgtactttggttaagaaaatgaatgttcagc |
12933349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 18555917 - 18556102
Alignment:
| Q |
18 |
gaactgatattcttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaat |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18555917 |
gaactgatattcttataagtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaat |
18556016 |
T |
|
| Q |
118 |
tcccaaactacaaaagataatggtattaatggccttctgtattttaatttcaggtcatgaacaaaatttctaagtc-atttgtgga |
202 |
Q |
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||||||||||||||| ||||||||| |||| |||||| ||||||||||||||| ||||||| ||||||||||| ||||||||| |
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| T |
18556017 |
tcccaaactacaaaatataatggtaataattaccttcttgattttaatttcaggttttgaacaatatttctaagtcaatttgtgga |
18556102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 35 - 202
Target Start/End: Original strand, 12958928 - 12959096
Alignment:
| Q |
35 |
tgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaactacaaaaga |
134 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
12958928 |
tgtttatttgaatcataactaactcattaattggttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaactataaaata |
12959027 |
T |
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| Q |
135 |
taatggtattaatggccttctgtattttaatttcaggtcatgaacaaaatttctaagtc-atttgtgga |
202 |
Q |
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|||||||| ||||| |||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
12959028 |
taatggtaataatgaccttcttgattttaatttcaggttttgaacaaaatttctaagtcaatttgtgga |
12959096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 12900431 - 12900478
Alignment:
| Q |
67 |
gcttatggaattagaattttatttttatcatcttattgtgcatttcaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12900431 |
gcttatggaattagaattttatttttatcatcttgttgtgcatttcaa |
12900478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 12900482 - 12900546
Alignment:
| Q |
145 |
aatggccttctgtattttaatttcaggtcatgaacaaaatttctaagtcatttgtggaaagagaa |
209 |
Q |
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|||| |||||| |||||||||||||||| ||||||||||||||||||| |||||| |||||||| |
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| T |
12900482 |
aatgaccttcttgattttaatttcaggtcttgaacaaaatttctaagtcgtttgtgcaaagagaa |
12900546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 17922778 - 17922535
Alignment:
| Q |
13 |
gagaagaactgatattcttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgt---gcat |
109 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |||| |||| |
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| T |
17922778 |
gagatgaactgatattcttataagtttatttcgatcataaccaacgcattaattgcttatggaattagaattttattttaatcatcttgttgttgtgcat |
17922679 |
T |
|
| Q |
110 |
ttcaaaattcccaaactacaaaagataatggtattaatggccttctgtattttaatttcaggtcatgaacaaaatttctaagtcatttgtggaaagagaa |
209 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
17922678 |
ttcaaaattcccaaactacaaaatataatggtaataataaccttcttgattttaatttcaggtcttgaacaaaatttctaagtcatttgtggaaagagaa |
17922579 |
T |
|
| Q |
210 |
gttatgcgacataatgtactttggttaagaaaatgaatggtcagc |
254 |
Q |
| |
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||||||| ||||||||||||| | |||||||||||||||||||| |
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|
| T |
17922578 |
gttatgcagcataatgtacttt-gctaagaaaatgaatggtcagc |
17922535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 10612567 - 10612698
Alignment:
| Q |
21 |
ctgatattcttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcc |
120 |
Q |
| |
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|||| ||| |||||| |||||||||||||||||||||||| |||||| ||||||| | ||||| ||||||||||||||||||||||||||||| |||| |
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| T |
10612567 |
ctgacatttttatatatttatttgaatcataactaactcaataattgtttatggact---aatttgatttttatcatcttattgtgcatttcaaatttcc |
10612663 |
T |
|
| Q |
121 |
caaactacaaaagataatggtattaatggccttct |
155 |
Q |
| |
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||||| ||||| ||||| ||| |||||||||||| |
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| T |
10612664 |
taaacttcaaaatataatagtaataatggccttct |
10612698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 10716324 - 10716248
Alignment:
| Q |
37 |
tttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttca |
113 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||| |
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|
| T |
10716324 |
tttatttgaataataactaactctataattgcttatggaattataatttgatctttatcatcttattgtgcatttca |
10716248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 10565870 - 10565985
Alignment:
| Q |
33 |
tatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaactacaaaa |
132 |
Q |
| |
|
||||| |||| ||||||||||||| |||||| ||| ||||||| ||| |||| |||||||| ||| |||| ||||||| |||||||| ||||||||||| |
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| T |
10565870 |
tatgtgtattcgaatcataactaaatcattatttggttatggagttatcatttgatttttattatcatattttgcattt-aaaattcctaaactacaaaa |
10565968 |
T |
|
| Q |
133 |
gataatggtattaatgg |
149 |
Q |
| |
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| ||||||| |||||| |
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|
| T |
10565969 |
tacaatggtaataatgg |
10565985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 10746376 - 10746321
Alignment:
| Q |
30 |
ttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattt |
85 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
10746376 |
ttatatgcttatttgaatcataactaactcattaattgcttatgcaattataattt |
10746321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 10581862 - 10581977
Alignment:
| Q |
33 |
tatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaactacaaaa |
132 |
Q |
| |
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||||| |||| ||||||||||||| |||||| ||| ||||||| ||| |||| |||||||| ||| |||| ||||||| || ||||| ||||| ||||| |
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| T |
10581862 |
tatgtgtattcgaatcataactaaatcattatttggttatggagttatcatttgatttttattatcatattttgcattt-aatattcctaaacttcaaaa |
10581960 |
T |
|
| Q |
133 |
gataatggtattaatgg |
149 |
Q |
| |
|
| ||||||| |||||| |
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|
| T |
10581961 |
tacaatggtaataatgg |
10581977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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