View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10194_low_18 (Length: 250)
Name: NF10194_low_18
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10194_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 24400705 - 24400941
Alignment:
| Q |
1 |
attcggtaactgggaaaagaaaccactcttttatggatgctgttagagtcaatcttggtaataacacattacactcttcactatgtccaatcactctaga |
100 |
Q |
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| T |
24400705 |
attctgtaactgggaaaagaaaccactcttttatggatgctgttagagtcaatcttggtaataacatattacactcttcactatgtccaatcactctagc |
24400804 |
T |
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| Q |
101 |
caacatagatatgtttttcatgaactgctaacaactataacttcaaattgtgtttaatgttgttggttcaggtaataaaaggacctatgtggctggtttc |
200 |
Q |
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| T |
24400805 |
caacatagatatgtttttcatgaactgctaacaactataacttcaaattgtgtttaa---tgttggttaaggtaataaaaggacctatgtggctggtttc |
24400901 |
T |
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| Q |
201 |
cttcaatttttgagcttgtatgtgactagtgttgcctatg |
240 |
Q |
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| T |
24400902 |
cttcaatttttgagcttgtatgtgactagtgttgcctatg |
24400941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 24377867 - 24378081
Alignment:
| Q |
6 |
gtaactgggaaaagaaaccactcttttatggatgctgttagagtcaatcttggtaataacacattacactcttcactatgtccaatcactctagacaaca |
105 |
Q |
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| T |
24377867 |
gtaaatgggaaaagaaactactcttttatggatgctgttagagtcaatcttggtaattaaacataacattcttcaccttgtttaatcactctacccaaca |
24377966 |
T |
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| Q |
106 |
tagatatgtttttcatgaactgctaacaactataacttcaaattgtgtttaatgttgttggttcaggtaataaaaggacctatgtggctggtttccttca |
205 |
Q |
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| T |
24377967 |
tatatatgttttt----------------ttataactttaatttgagtttaatgct----gtacaggtacaaaaagggcatatgtggctggtttccttca |
24378046 |
T |
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| Q |
206 |
atttttgagcttgtatgtgactagtgttgcctatg |
240 |
Q |
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| T |
24378047 |
atttttgagcttgtatgtcactagtattgcctatg |
24378081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 24413310 - 24413383
Alignment:
| Q |
167 |
ttcaggtaataaaaggacctatgtggctggtttccttcaatttttgagcttgtatgtgactagtgttgcctatg |
240 |
Q |
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| T |
24413310 |
ttcaggtaataaaaggacatatgtggctggtttccttcaatttttgaccttgtatgggactggtgttgcctatg |
24413383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 24420731 - 24420661
Alignment:
| Q |
167 |
ttcaggtaataaaaggacctatgtggctggtttccttcaatttttgagcttgtatgtgactagtgttgcct |
237 |
Q |
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| T |
24420731 |
ttcaggtaataagaggacatatgtggctggtttccttcaatttttgaccttgtatgggactagtgttgcct |
24420661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24413154 - 24413214
Alignment:
| Q |
1 |
attcggtaactgggaaaagaaaccactcttttatggatgctgttagagtcaatcttggtaa |
61 |
Q |
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| T |
24413154 |
attcggtaactgggaaaaggaactactcttacatggatgctgttagagttaatcttggtaa |
24413214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 24420887 - 24420827
Alignment:
| Q |
1 |
attcggtaactgggaaaagaaaccactcttttatggatgctgttagagtcaatcttggtaa |
61 |
Q |
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| T |
24420887 |
attcggtaactgggaaaaggaactactcttacatggatgctgttagagttaatcttggtaa |
24420827 |
T |
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