View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10194_low_19 (Length: 250)
Name: NF10194_low_19
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10194_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 36744538 - 36744296
Alignment:
| Q |
1 |
gaggaaattttcaccatcagttcggaagatttccttcaccattgctatgggactaatagcactgatgatatctgtcggtagcttaactcctccttcgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36744538 |
gaggaaattttcaccatcagttcggaagatttccttcaccattgctatgggactaatagcactgatgatatctgtcggtagcttaactcctccttcgaag |
36744439 |
T |
|
| Q |
101 |
aggcaacgaacttcttcgaaattatcaaactctttgtcgaagtcnnnnnnnttgcgaaatttaggtatcacattttgatttaaacctttcaatccaaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36744438 |
aggcaacgaacttcttcgaaattatcaaactctttgtcgaagtcaaaaaaattgcgaaatttaggtatcacattttgatttaaacctttcaatccaaatc |
36744339 |
T |
|
| Q |
201 |
caaggaagtcagcttgcttcaagtgaccaaaaacttcatctct |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36744338 |
caaggaagtcagcttgcttcaagtgaccaaaaacttcatctct |
36744296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University