View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10194_low_2 (Length: 497)

Name: NF10194_low_2
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10194_low_2
NF10194_low_2
[»] chr6 (2 HSPs)
chr6 (1-460)||(33585053-33585513)
chr6 (115-179)||(21112687-21112751)
[»] chr5 (4 HSPs)
chr5 (15-104)||(17820259-17820348)
chr5 (115-172)||(6666287-6666344)
chr5 (115-187)||(8871835-8871907)
chr5 (77-118)||(15876096-15876137)
[»] chr7 (7 HSPs)
chr7 (220-272)||(7679104-7679156)
chr7 (115-179)||(15042684-15042748)
chr7 (115-179)||(22293434-22293498)
chr7 (115-187)||(40819346-40819418)
chr7 (115-180)||(22204745-22204810)
chr7 (115-180)||(22229929-22229994)
chr7 (115-179)||(26279368-26279432)
[»] chr2 (2 HSPs)
chr2 (121-179)||(14811873-14811931)
chr2 (121-178)||(29081653-29081710)
[»] chr4 (1 HSPs)
chr4 (115-196)||(26261772-26261853)
[»] chr8 (3 HSPs)
chr8 (115-179)||(29055156-29055220)
chr8 (115-189)||(3046185-3046259)
chr8 (115-179)||(10861230-10861294)
[»] chr3 (2 HSPs)
chr3 (115-179)||(29360332-29360396)
chr3 (115-172)||(39580484-39580541)


Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 33585053 - 33585513
Alignment:
Q  1 ttttttcttttcagttttatttaattaattaacatggtttgtgcagggaaaatttggaggggaacttttggagggaaacttgtaggattatagttataaa 100  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33585053 ttttttcttttcagttatatttaattaattaacatgggttgtgcagggaaaatttggaggggaacttttggagggaaatttgtaggattatagttataaa 33585152  T
Q  101 tgatactgatgatgattttattttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttctcgtatcaatatcgtattgtatccggta 200  Q
    |||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  33585153 tgatactgatgatgatttaattttttaataacgtttcaatgtcgtatcgtatcggaagttttgaaaaatttctcgtatcaatatcgtattgtatccggta 33585252  T
Q  201 tcctagcttcataggttgtcatgtttatctactttacaatttttatctttcaaagcaataaaacctgttaagtcttcatcagtcataatttatttgattc 300  Q
    ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33585253 tcctaacttcataggttgtaatgtttatctactttacaatttttgtctttcaaagcaataaaacctgttaagtcttcatcaatcataatttatttgattc 33585352  T
Q  301 cagtatatatcagcggtatgcctcttcaaattattaatactgttctatgaacattttgtaaaatcaaagtagtttt-cgtannnnnnnnnctccattcaa 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |          ||||||||||    
T  33585353 cagtatatatcagcggtatgcctcttcaaattattaatactgttctatgaacattttgtaaaatcaaagtagttttccttttttttttttctccattcaa 33585452  T
Q  400 tatgttcagtagattctcactgtataggtataaataatatcacatattcgcaagttaatac 460  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  33585453 tatgttcagtagattctcactgtataggtatatataatatcacatattcgcaaattaatac 33585513  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 21112687 - 21112751
Alignment:
Q  115 attttattttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttctcgtatc 179  Q
    |||| |||||||||||||||||| | |  ||||||||||||||||||| |||| |||| ||||||    
T  21112687 atttaattttttaataacgtatcgaggccgtatcgtatcggaaattttgaaaattttcccgtatc 21112751  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 17820259 - 17820348
Alignment:
Q  15 ttttatttaattaattaacatggtttgtgcagggaaaatttggaggggaacttttggagggaaacttgtaggattatagttataaatgat 104  Q
    ||||||||||||||||||||| | ||||| ||||||  ||||||||| || ||||||  || |||||||| |||||||||||||||||||    
T  17820259 ttttatttaattaattaacataggttgtggagggaatgtttggagggaaatttttgggagggaacttgtaagattatagttataaatgat 17820348  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 6666287 - 6666344
Alignment:
Q  115 attttattttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttc 172  Q
    |||| |||||||||||||||||| | |  |||||||||||| ||||||||||||||||    
T  6666287 atttaattttttaataacgtatcgaggccgtatcgtatcgggaattttaaaaaatttc 6666344  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 8871835 - 8871907
Alignment:
Q  115 attttattttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttctcgtatcaatatcgt 187  Q
    |||| |||||||||||||||||| | |  |||||||||||| |||||| |||| |||| ||||||| ||||||    
T  8871835 atttaattttttaataacgtatcgaggccgtatcgtatcgggaattttgaaaattttcccgtatcagtatcgt 8871907  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 15876137 - 15876096
Alignment:
Q  77 aacttgtaggattatagttataaatgatactgatgatgattt 118  Q
    |||||||||||||||| |||||||||||  ||||||||||||    
T  15876137 aacttgtaggattataattataaatgatgatgatgatgattt 15876096  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 7679156 - 7679104
Alignment:
Q  220 catgtttatctactttacaatttttatctttcaaagcaataaaacctgttaag 272  Q
    ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  7679156 catgtttatctactttaaaatttttgtcttttaaagcaataaaacctgttaag 7679104  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 15042748 - 15042684
Alignment:
Q  115 attttattttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttctcgtatc 179  Q
    |||| |||||| ||||||||||| | || |||||||||||| | |||| ||||||||||||||||    
T  15042748 atttaatttttgaataacgtatcgaggtcgtatcgtatcgggagttttgaaaaatttctcgtatc 15042684  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 22293434 - 22293498
Alignment:
Q  115 attttattttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttctcgtatc 179  Q
    |||| |||||||||||||||||| |  | |||| |||||||||||||| ||||||||||| ||||    
T  22293434 atttaattttttaataacgtatcgagttcgtattgtatcggaaattttgaaaaatttctcatatc 22293498  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 40819418 - 40819346
Alignment:
Q  115 attttattttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttctcgtatcaatatcgt 187  Q
    |||| |||||||||||||||||| | | ||||| ||||||| |||||| |||| |||| |||||| |||||||    
T  40819418 atttaattttttaataacgtatcgaggctgtattgtatcgggaattttgaaaattttcccgtatcgatatcgt 40819346  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 22204810 - 22204745
Alignment:
Q  115 attttattttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttctcgtatca 180  Q
    |||| |||||||||||||||||| |    |||||||||| |||||||| ||||||||| |||||||    
T  22204810 atttaattttttaataacgtatcgagaccgtatcgtatcagaaattttgaaaaatttcacgtatca 22204745  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 22229929 - 22229994
Alignment:
Q  115 attttattttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttctcgtatca 180  Q
    |||| |||||||||||||||||| |    |||||||||| |||||||| ||||||||| |||||||    
T  22229929 atttaattttttaataacgtatcgagaccgtatcgtatcagaaattttgaaaaatttcacgtatca 22229994  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 26279432 - 26279368
Alignment:
Q  115 attttattttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttctcgtatc 179  Q
    |||| |||||||||||||||||| | |   |||||||||||||||||| ||||| ||| ||||||    
T  26279432 atttaattttttaataacgtatcgaggccctatcgtatcggaaattttgaaaaaattcccgtatc 26279368  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 14811873 - 14811931
Alignment:
Q  121 ttttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttctcgtatc 179  Q
    ||||||||||||||||| | || ||||||||||||||||||| |||| |||| ||||||    
T  14811873 ttttttaataacgtatcgaggtcgtatcgtatcggaaattttgaaaattttcccgtatc 14811931  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 29081653 - 29081710
Alignment:
Q  121 ttttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttctcgtat 178  Q
    ||||||||||||||||| |    || |||||||| |||||||||||||||||||||||    
T  29081653 ttttttaataacgtatcgagtacgtgtcgtatcgaaaattttaaaaaatttctcgtat 29081710  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 26261772 - 26261853
Alignment:
Q  115 attttattttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttctcgtatcaatatcgtattgtatcc 196  Q
    |||| |||||||||||||||||| | |   ||||||||||| |||||| ||||||||| |||||||  ||| ||||||||||    
T  26261772 atttaattttttaataacgtatcgaggccatatcgtatcgggaattttgaaaaatttcccgtatcagcatcatattgtatcc 26261853  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 29055156 - 29055220
Alignment:
Q  115 attttattttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttctcgtatc 179  Q
    |||| |||||||||||||||||||| |  |||||||||||| |||||| |||| |||| ||||||    
T  29055156 atttaattttttaataacgtatcaaggccgtatcgtatcgggaattttgaaaattttcccgtatc 29055220  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 3046259 - 3046185
Alignment:
Q  115 attttattttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttctcgtatcaatatcgtat 189  Q
    |||| |||||||||||||||||| | |   |||||||||||||||||| |||| || | |||||| |||||||||    
T  3046259 atttaattttttaataacgtatcgaggccatatcgtatcggaaattttgaaaatttgcccgtatcgatatcgtat 3046185  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 10861294 - 10861230
Alignment:
Q  115 attttattttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttctcgtatc 179  Q
    |||| |||||||||||||||||| | |  ||||||||| ||||||||| |||| |||| ||||||    
T  10861294 atttaattttttaataacgtatcgaggccgtatcgtattggaaattttgaaaattttcccgtatc 10861230  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 29360332 - 29360396
Alignment:
Q  115 attttattttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttctcgtatc 179  Q
    |||| ||||||||||||||||||||    |||||||||||| |||||| ||||||||| ||||||    
T  29360332 atttaattttttaataacgtatcaagacagtatcgtatcgggaattttgaaaaatttcccgtatc 29360396  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 39580484 - 39580541
Alignment:
Q  115 attttattttttaataacgtatcaatgttgtatcgtatcggaaattttaaaaaatttc 172  Q
    |||| |||||||||||||||||| | |  ||||||||||||||||||| |||| ||||    
T  39580484 atttaattttttaataacgtatcgaggccgtatcgtatcggaaattttgaaaattttc 39580541  T

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