View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10194_low_23 (Length: 243)

Name: NF10194_low_23
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10194_low_23
NF10194_low_23
[»] scaffold0002 (4 HSPs)
scaffold0002 (130-189)||(345902-345959)
scaffold0002 (127-182)||(376381-376434)
scaffold0002 (130-190)||(344934-344992)
scaffold0002 (133-189)||(374335-374389)
[»] chr2 (20 HSPs)
chr2 (123-190)||(25977860-25977925)
chr2 (132-190)||(25979255-25979311)
chr2 (22-84)||(15018022-15018084)
chr2 (133-190)||(25283276-25283331)
chr2 (131-182)||(2412440-2412489)
chr2 (125-161)||(15531021-15531057)
chr2 (132-190)||(1777468-1777524)
chr2 (132-190)||(8809595-8809652)
chr2 (135-190)||(8810707-8810760)
chr2 (130-193)||(29794318-29794378)
chr2 (135-189)||(23863055-23863107)
chr2 (131-161)||(23861750-23861780)
chr2 (127-161)||(24358610-24358644)
chr2 (136-181)||(24754171-24754214)
chr2 (120-161)||(2481529-2481570)
chr2 (128-161)||(14003404-14003437)
chr2 (99-132)||(17248001-17248034)
chr2 (128-161)||(20131312-20131345)
chr2 (129-161)||(25705421-25705453)
chr2 (131-190)||(36837782-36837839)
[»] chr5 (19 HSPs)
chr5 (21-84)||(22094982-22095045)
chr5 (132-190)||(3936577-3936633)
chr5 (132-190)||(27571133-27571189)
chr5 (130-183)||(31540493-31540544)
chr5 (130-190)||(3954049-3954107)
chr5 (128-190)||(4565388-4565448)
chr5 (132-189)||(34911833-34911888)
chr5 (130-188)||(15599762-15599818)
chr5 (123-161)||(5917116-5917154)
chr5 (127-161)||(19565803-19565837)
chr5 (127-161)||(35877024-35877058)
chr5 (120-161)||(29875697-29875738)
chr5 (129-161)||(1104854-1104886)
chr5 (129-161)||(1105120-1105152)
chr5 (117-161)||(6118471-6118515)
chr5 (135-190)||(25254135-25254188)
chr5 (135-190)||(25317925-25317978)
chr5 (121-161)||(31037713-31037753)
chr5 (129-161)||(32108804-32108836)
[»] chr6 (24 HSPs)
chr6 (26-84)||(503269-503327)
chr6 (26-84)||(8264568-8264626)
chr6 (129-182)||(3276363-3276414)
chr6 (130-190)||(21953203-21953261)
chr6 (128-182)||(1972395-1972447)
chr6 (132-190)||(16995450-16995506)
chr6 (128-190)||(17517313-17517373)
chr6 (30-84)||(5085767-5085821)
chr6 (133-190)||(20897501-20897556)
chr6 (133-193)||(1974153-1974211)
chr6 (124-161)||(6412209-6412246)
chr6 (135-182)||(20895960-20896005)
chr6 (131-190)||(34998145-34998202)
chr6 (135-193)||(17516164-17516220)
chr6 (133-190)||(18810532-18810587)
chr6 (127-161)||(19129492-19129526)
chr6 (127-161)||(19321103-19321137)
chr6 (136-189)||(20391217-20391268)
chr6 (133-190)||(21165246-21165301)
chr6 (128-161)||(1007119-1007152)
chr6 (133-181)||(20393281-20393327)
chr6 (131-183)||(34995112-34995162)
chr6 (129-161)||(21994375-21994407)
chr6 (129-161)||(22543690-22543722)
[»] chr7 (28 HSPs)
chr7 (130-190)||(31848148-31848206)
chr7 (132-190)||(24195606-24195662)
chr7 (26-84)||(25924415-25924473)
chr7 (130-183)||(32197920-32197971)
chr7 (134-193)||(32196685-32196742)
chr7 (132-190)||(13418949-13419005)
chr7 (132-190)||(41693644-41693700)
chr7 (129-182)||(5611519-5611570)
chr7 (131-183)||(24197114-24197164)
chr7 (136-183)||(32544785-32544830)
chr7 (128-190)||(17066420-17066480)
chr7 (132-190)||(35212067-35212123)
chr7 (122-161)||(35838309-35838348)
chr7 (131-161)||(12932755-12932785)
chr7 (127-161)||(25988379-25988413)
chr7 (134-183)||(31489946-31489993)
chr7 (129-190)||(41694959-41695018)
chr7 (131-164)||(6892229-6892262)
chr7 (128-161)||(11767247-11767280)
chr7 (128-161)||(23399607-23399640)
chr7 (128-161)||(36748193-36748226)
chr7 (136-188)||(38742184-38742234)
chr7 (128-161)||(41054208-41054241)
chr7 (128-161)||(46759653-46759686)
chr7 (129-161)||(3975810-3975842)
chr7 (130-162)||(27037873-27037905)
chr7 (135-190)||(28462632-28462685)
chr7 (139-190)||(43869916-43869965)
[»] chr1 (34 HSPs)
chr1 (126-190)||(35721094-35721156)
chr1 (132-190)||(37395632-37395688)
chr1 (135-193)||(51240121-51240177)
chr1 (133-190)||(23469973-23470028)
chr1 (26-84)||(25504730-25504788)
chr1 (121-190)||(27264220-27264287)
chr1 (132-193)||(48594049-48594108)
chr1 (132-193)||(48598660-48598719)
chr1 (133-181)||(11711266-11711312)
chr1 (127-190)||(26863854-26863915)
chr1 (132-183)||(45979507-45979556)
chr1 (132-190)||(9774892-9774948)
chr1 (132-182)||(20723700-20723748)
chr1 (132-190)||(27262907-27262963)
chr1 (129-183)||(34934758-34934810)
chr1 (129-183)||(35722296-35722348)
chr1 (133-190)||(20722472-20722527)
chr1 (133-190)||(46075054-46075109)
chr1 (133-189)||(24609919-24609973)
chr1 (132-183)||(17977570-17977619)
chr1 (132-183)||(35911899-35911948)
chr1 (128-186)||(2604135-2604191)
chr1 (122-161)||(15516571-15516610)
chr1 (133-183)||(37396851-37396899)
chr1 (132-190)||(47038865-47038921)
chr1 (131-193)||(48334133-48334193)
chr1 (133-190)||(17976761-17976816)
chr1 (129-190)||(39163028-39163087)
chr1 (132-193)||(48588962-48589021)
chr1 (128-161)||(10887228-10887261)
chr1 (138-190)||(27816724-27816774)
chr1 (129-161)||(30323265-30323297)
chr1 (129-161)||(45380268-45380300)
chr1 (131-182)||(46073883-46073932)
[»] chr8 (26 HSPs)
chr8 (126-193)||(3483626-3483691)
chr8 (127-190)||(10717115-10717176)
chr8 (128-189)||(28997998-28998057)
chr8 (121-193)||(41847181-41847251)
chr8 (131-190)||(10718452-10718509)
chr8 (127-190)||(38658475-38658536)
chr8 (22-81)||(4987798-4987857)
chr8 (132-190)||(22272274-22272330)
chr8 (132-193)||(10292815-10292874)
chr8 (123-161)||(28346730-28346768)
chr8 (133-193)||(1420443-1420501)
chr8 (134-190)||(4182623-4182677)
chr8 (124-161)||(11019829-11019866)
chr8 (131-190)||(38456734-38456791)
chr8 (131-190)||(45517964-45518021)
chr8 (132-190)||(22534726-22534782)
chr8 (132-182)||(30123151-30123199)
chr8 (132-190)||(36588221-36588277)
chr8 (132-189)||(14197824-14197879)
chr8 (128-161)||(10337114-10337147)
chr8 (134-190)||(28996835-28996889)
chr8 (131-190)||(1376933-1376990)
chr8 (131-190)||(1385559-1385616)
chr8 (129-161)||(3512238-3512270)
chr8 (131-182)||(22270941-22270990)
chr8 (129-161)||(30124254-30124286)
[»] chr4 (30 HSPs)
chr4 (26-82)||(8935420-8935476)
chr4 (22-84)||(19114781-19114843)
chr4 (26-84)||(49926003-49926061)
chr4 (22-81)||(19648057-19648116)
chr4 (128-190)||(42359350-42359410)
chr4 (128-190)||(45619735-45619795)
chr4 (132-189)||(3880501-3880556)
chr4 (133-182)||(22204055-22204102)
chr4 (133-189)||(32699319-32699373)
chr4 (131-190)||(45618283-45618340)
chr4 (128-190)||(3879081-3879141)
chr4 (132-182)||(33137240-33137288)
chr4 (132-190)||(42358031-42358087)
chr4 (126-161)||(42823769-42823804)
chr4 (133-183)||(44705299-44705347)
chr4 (127-161)||(13074097-13074131)
chr4 (129-190)||(19674410-19674469)
chr4 (50-84)||(23657740-23657774)
chr4 (132-161)||(5259182-5259211)
chr4 (128-161)||(14594201-14594234)
chr4 (133-193)||(19675621-19675679)
chr4 (131-183)||(35054660-35054710)
chr4 (128-161)||(35464013-35464046)
chr4 (131-183)||(41933816-41933866)
chr4 (129-161)||(13631224-13631256)
chr4 (129-161)||(14488159-14488191)
chr4 (127-183)||(34660933-34660988)
chr4 (132-164)||(41324768-41324800)
chr4 (136-183)||(41935081-41935126)
chr4 (123-167)||(50754222-50754266)
[»] chr3 (26 HSPs)
chr3 (123-182)||(53121292-53121349)
chr3 (124-190)||(52403128-52403192)
chr3 (131-189)||(54437472-54437528)
chr3 (122-191)||(20585647-20585714)
chr3 (128-189)||(46026071-46026130)
chr3 (130-190)||(47433813-47433871)
chr3 (131-190)||(39820608-39820665)
chr3 (130-193)||(52707533-52707594)
chr3 (132-190)||(52401016-52401072)
chr3 (135-190)||(20488368-20488421)
chr3 (128-190)||(45268574-45268634)
chr3 (126-161)||(52342188-52342223)
chr3 (133-183)||(52708628-52708676)
chr3 (119-161)||(26089716-26089758)
chr3 (127-161)||(30128278-30128312)
chr3 (134-183)||(40476222-40476269)
chr3 (132-189)||(40477379-40477434)
chr3 (123-157)||(50998874-50998908)
chr3 (128-161)||(12740902-12740935)
chr3 (134-190)||(20489362-20489416)
chr3 (128-161)||(39132878-39132911)
chr3 (128-161)||(40545559-40545592)
chr3 (131-183)||(42446524-42446574)
chr3 (134-190)||(45267306-45267360)
chr3 (128-161)||(47005491-47005524)
chr3 (128-161)||(51550418-51550451)
[»] scaffold0517 (2 HSPs)
scaffold0517 (132-190)||(11526-11582)
scaffold0517 (133-183)||(10315-10363)
[»] scaffold0001 (2 HSPs)
scaffold0001 (133-190)||(119593-119648)
scaffold0001 (133-190)||(120989-121044)
[»] scaffold0106 (1 HSPs)
scaffold0106 (131-190)||(30911-30968)
[»] scaffold0562 (1 HSPs)
scaffold0562 (128-190)||(9917-9977)
[»] scaffold0765 (1 HSPs)
scaffold0765 (136-189)||(1863-1914)
[»] scaffold0230 (1 HSPs)
scaffold0230 (133-190)||(435-490)
[»] scaffold0684 (1 HSPs)
scaffold0684 (128-161)||(2632-2665)
[»] scaffold0005 (1 HSPs)
scaffold0005 (128-161)||(223144-223177)
[»] scaffold0160 (1 HSPs)
scaffold0160 (129-161)||(27336-27368)
[»] scaffold0024 (1 HSPs)
scaffold0024 (129-161)||(75736-75768)


Alignment Details
Target: scaffold0002 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 345959 - 345902
Alignment:
Q  130 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccct 189  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||    
T  345959 ttaggctaaaatatgtttttggtccctgc--aaatatagcgaatttgggttttggtccct 345902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 376434 - 376381
Alignment:
Q  127 attttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggtttt 182  Q
    |||||||||||||||||| |||||||||||||  ||||||||||| ||||||||||    
T  376434 attttaggctaaaatatgcttttggtccctgc--aaatatagcgagtttgggtttt 376381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 344934 - 344992
Alignment:
Q  130 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||| ||||||| |||||||||||||  |||||| |||| ||||||||||| ||||||    
T  344934 ttaggctcaaatatgattttggtccctgc--aaatatggcgagtttgggttttggtccctg 344992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 374335 - 374389
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccct 189  Q
    |||||||||||| ||||| |||||||  ||||||||||| ||||||||||| |||||    
T  374335 ggctaaaatatgattttgatccctgc--aaatatagcgagtttgggttttggtccct 374389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 25977860 - 25977925
Alignment:
Q  123 attaattttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| || ||||||||||| ||||||    
T  25977860 attaattttaggctaaaatatgtttttggtccctgc--aaatatagtgagtttgggttttggtccctg 25977925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 25979311 - 25979255
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  25979311 aggctaaaatatgtttttggtccctgc--aaatatagcgaatttgggttttggtccctg 25979255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 15018084 - 15018022
Alignment:
Q  22 tcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 84  Q
    ||||| |||||| |||||||||||||| |||| |||||||||||||| ||||||| |||||||    
T  15018084 tcggttcctttgtgtgttcgttttcgtaggttatttgagctttatgagaataaatatgttaca 15018022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 25283331 - 25283276
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||||||||||| |||||||  ||||||||||||| |||||||||||||    
T  25283331 ggctaaaatatgtttttggtcactgcaaa--tatagcgaatttgagttttgatccctg 25283276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 2412489 - 2412440
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggtttt 182  Q
    ||||||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  2412489 taggctaaaatatgtttttggtccctgc--aaatatagcgagtttgggtttt 2412440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 15531021 - 15531057
Alignment:
Q  125 taattttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||||||||||||||||||||||||    
T  15531021 taattttaggctaaaatatgtttttggtccctgcaaa 15531057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 1777468 - 1777524
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||||||||  ||||||||||| |||| |||||| ||||||    
T  1777468 aggctaaaatatgtttttggtccctgc--aaatatagcgagtttgagttttggtccctg 1777524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 8809595 - 8809652
Alignment:
Q  132 aggctaaaatatgtttttggtccc-tgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||||| |||  ||||||| ||||||||||||||| ||||||    
T  8809595 aggctaaaatatgtttttggtcccttgc--aaatataacgaatttgggttttggtccctg 8809652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 8810760 - 8810707
Alignment:
Q  135 ctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||||||||| ||||  ||||||||||||||||| |||| |||||||    
T  8810760 ctaaaatatgtttttggtctctgc--aaatatagcgaatttggattttaatccctg 8810707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 29794378 - 29794318
Alignment:
Q  130 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctgata 193  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||||| |||||| | |||||||    
T  29794378 ttaggctaaaatatgtttt-ggtccctgcaaa--tatagcgaatttgagttttggttcctgata 29794318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 23863107 - 23863055
Alignment:
Q  135 ctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccct 189  Q
    ||||||||||||||||||| ||||  |||||| |||| |||||||||||||||||    
T  23863107 ctaaaatatgtttttggtctctgc--aaatatggcgagtttgggttttgatccct 23863055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 161
Target Start/End: Original strand, 23861750 - 23861780
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||||||||||||||||||    
T  23861750 taggctaaaatatgtttttggtccctgcaaa 23861780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 24358610 - 24358644
Alignment:
Q  127 attttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||||| ||||||||||||||||    
T  24358610 attttaggctaaaatatggttttggtccctgcaaa 24358644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 24754214 - 24754171
Alignment:
Q  136 taaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 181  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||    
T  24754214 taaaatatgtttttggtccctgc--aaatatggcgaatttgggttt 24754171  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 2481570 - 2481529
Alignment:
Q  120 atcattaattttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||| |||| ||||||||||||| ||||||||||||||||    
T  2481570 atcatttatttaaggctaaaatatggttttggtccctgcaaa 2481529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 14003404 - 14003437
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  14003404 ttttaggctaaaatatggttttggtccctgcaaa 14003437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 17248001 - 17248034
Alignment:
Q  99 caattagaacacaattaacatatcattaatttta 132  Q
    |||||| |||||||||||||||||||||||||||    
T  17248001 caattaaaacacaattaacatatcattaatttta 17248034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 20131312 - 20131345
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  20131312 ttttaggctaaaatatggttttggtccctgcaaa 20131345  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 25705453 - 25705421
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||| ||||||||||||||||    
T  25705453 tttaggctaaaatatggttttggtccctgcaaa 25705421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 36837839 - 36837782
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||| |||||||| ||||||||| |||||||  |||||||| ||||||||||| ||||||    
T  36837839 taggttaaaatatatttttggtctctgcaaa--tatagcgagtttgggttttggtccctg 36837782  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 22094982 - 22095045
Alignment:
Q  21 ttcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 84  Q
    |||||| |||||  |||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  22094982 ttcggtccctttttgtgttcgttttcgtaggttgtttgagctttatgaaaataaatatgttaca 22095045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 3936577 - 3936633
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||||||||  ||||||||||| ||||||||||| ||||||    
T  3936577 aggctaaaatatgtttttggtccctgc--aaatatagcgagtttgggttttggtccctg 3936633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 27571189 - 27571133
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||| ||||||||||||||||  |||||||| ||||||||||||||||||    
T  27571189 aggctaaaatatgattttggtccctgcaaa--tatagcgagtttgggttttgatccctg 27571133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 31540493 - 31540544
Alignment:
Q  130 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    |||||||||||||||||||||||||||||  ||||||| |||||||||||||||    
T  31540493 ttaggctaaaatatgtttttggtccctgc--aaatataacgaatttgggttttg 31540544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 3954049 - 3954107
Alignment:
Q  130 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||||||||||||||| |||  ||||||| ||||||||||||||| ||||||    
T  3954049 ttaggctaaaatatgtttttggtccttgc--aaatatatcgaatttgggttttggtccctg 3954107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 4565388 - 4565448
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||| ||||||  | ||||||||||| ||||||||||| ||||||    
T  4565388 ttttaggctaaaatatgtttttagtccct--acaaatatagcgagtttgggttttggtccctg 4565448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 34911888 - 34911833
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccct 189  Q
    ||||||||||||| |||||||||||||  ||||||||||| ||||| |||||||||||    
T  34911888 aggctaaaatatgattttggtccctgc--aaatatagcgagtttggattttgatccct 34911833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 15599762 - 15599818
Alignment:
Q  130 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccc 188  Q
    ||||||||||||||| |||||||||||  | |||||| |||||||||||||||| ||||    
T  15599762 ttaggctaaaatatgcttttggtccct--acaaatatggcgaatttgggttttggtccc 15599818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 5917116 - 5917154
Alignment:
Q  123 attaattttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  5917116 attaattataggctaaaatatggttttggtccctgcaaa 5917154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 19565837 - 19565803
Alignment:
Q  127 attttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||||| ||||||||||||||||    
T  19565837 attttaggctaaaatatggttttggtccctgcaaa 19565803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 35877058 - 35877024
Alignment:
Q  127 attttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||||| ||||||||||||||||    
T  35877058 attttaggctaaaatatggttttggtccctgcaaa 35877024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 29875738 - 29875697
Alignment:
Q  120 atcattaattttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||| ||||||||||||||||| |||| |||||||||||    
T  29875738 atcattatttttaggctaaaatatggttttagtccctgcaaa 29875697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 1104854 - 1104886
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||| ||||||||||||||||    
T  1104854 tttaggctaaaatatggttttggtccctgcaaa 1104886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 1105152 - 1105120
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||| ||||||||||||||||    
T  1105152 tttaggctaaaatatggttttggtccctgcaaa 1105120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 6118515 - 6118471
Alignment:
Q  117 catatcattaattttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||| ||||||||| |||||||||||| |||| |||||||||||    
T  6118515 catataattaatttttggctaaaatatggttttagtccctgcaaa 6118471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 25254188 - 25254135
Alignment:
Q  135 ctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||| |||||||||||||||| |||||  || |||| |||||||||||||    
T  25254188 ctaaaatatgcttttggtccctgcaaatatata--gagtttgagttttgatccctg 25254135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 25317978 - 25317925
Alignment:
Q  135 ctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||| |||||||||||||||| |||||  || |||| |||||||||||||    
T  25317978 ctaaaatatgcttttggtccctgcaaatatata--gagtttgagttttgatccctg 25317925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 31037753 - 31037713
Alignment:
Q  121 tcattaattttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||| |||||||||||||||| |||| |||||||||||    
T  31037753 tcattaaatttaggctaaaatatggttttagtccctgcaaa 31037713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 32108804 - 32108836
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||| ||||||||||||||||    
T  32108804 tttaggctaaaatatggttttggtccctgcaaa 32108836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 503269 - 503327
Alignment:
Q  26 tacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 84  Q
    |||||||| |||||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  503269 tacctttgtgtgttcgttttcgtaggttgtttgagctttttgaaaataaatatgttaca 503327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 8264626 - 8264568
Alignment:
Q  26 tacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 84  Q
    |||||||| |||||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  8264626 tacctttgtgtgttcgttttcgtaggttgtttgagctttttgaaaataaatatgttaca 8264568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 3276363 - 3276414
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggtttt 182  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  3276363 tttaggctaaaatatgtttttggtccctgc--aaatatagcgaatttggatttt 3276414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 21953203 - 21953261
Alignment:
Q  130 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||||| |||||||||||||  ||||||||||||||||| ||||| ||||||    
T  21953203 ttaggctaaaatatgcttttggtccctgc--aaatatagcgaatttggattttggtccctg 21953261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 1972395 - 1972447
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggtttt 182  Q
    |||| ||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  1972395 tttttggctaaaatatgtttttggtccctgc--aaataaagcgaatttgggtttt 1972447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 16995450 - 16995506
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||||||||  |||||||  |||||||||||||| ||||||    
T  16995450 aggctaaaatatgtttttggtccctgc--aaatataaagaatttgggttttggtccctg 16995506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 17517373 - 17517313
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||||||||||||  |||||| |||| |||| |||||| ||||||    
T  17517373 ttttaggctaaaatatgtttttggtccctgc--aaatatggcgagtttgagttttggtccctg 17517313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 5085767 - 5085821
Alignment:
Q  30 tttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 84  Q
    |||| |||| ||||||||| ||||||||||||||||||| ||||||| |||||||    
T  5085767 tttgtgtgtacgttttcgtaggttgtttgagctttatgagaataaatatgttaca 5085821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 20897556 - 20897501
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||| |||||||||||||  |||||||| |||||||||||||| ||||||    
T  20897556 ggctaaaatatggttttggtccctgc--aaatatagtgaatttgggttttggtccctg 20897501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 1974211 - 1974153
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctgata 193  Q
    |||||||||||||||||| ||| ||||||  ||||||||||||| |||||| |||||||||    
T  1974211 ggctaaaatatgtttttgatccttgcaaa--tatagcgaatttgagttttggtccctgata 1974153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 6412209 - 6412246
Alignment:
Q  124 ttaattttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  6412209 ttaattttaggctaaaatatggttttggtccctgcaaa 6412246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 20895960 - 20896005
Alignment:
Q  135 ctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggtttt 182  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||    
T  20895960 ctaaaatatgtttttggtccctgc--aaatatagcgaatttgagtttt 20896005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 34998202 - 34998145
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||| ||||| |||||||  ||||||||||| ||||||||||| ||||||    
T  34998202 taggctaaaatatgcttttgatccctgc--aaatatagcgagtttgggttttggtccctg 34998145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 17516164 - 17516220
Alignment:
Q  135 ctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctgata 193  Q
    ||||||||||||||||||||||||  |||||| | || ||||||||||| |||||||||    
T  17516164 ctaaaatatgtttttggtccctgc--aaatatggtgagtttgggttttggtccctgata 17516220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 18810532 - 18810587
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||| |||||||||||||  |||||||| || ||||||||||| ||||||    
T  18810532 ggctaaaatatgattttggtccctgc--aaatatagtgagtttgggttttggtccctg 18810587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 19129526 - 19129492
Alignment:
Q  127 attttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||||| ||||||||||||||||    
T  19129526 attttaggctaaaatatgattttggtccctgcaaa 19129492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 19321137 - 19321103
Alignment:
Q  127 attttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||||| ||||||||||||||||    
T  19321137 attttaggctaaaatatggttttggtccctgcaaa 19321103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 20391217 - 20391268
Alignment:
Q  136 taaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccct 189  Q
    ||||||||| |||||||||||||  |||||||| |||||||||||||| |||||    
T  20391217 taaaatatgcttttggtccctgc--aaatatagtgaatttgggttttggtccct 20391268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 21165246 - 21165301
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||| |||||||||||||  ||||||||||| |||| |||||| ||||||    
T  21165246 ggctaaaatatgcttttggtccctgc--aaatatagcgagtttgtgttttggtccctg 21165301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 1007119 - 1007152
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  1007119 ttttaggctaaaatatggttttggtccctgcaaa 1007152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 20393327 - 20393281
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 181  Q
    |||||||||||| ||||| ||||||||||  ||||||||||||||||||    
T  20393327 ggctaaaatatgcttttgatccctgcaaa--tatagcgaatttgggttt 20393281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 34995112 - 34995162
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    |||||||||||||| ||||| |||||||  |||||||||||||||| ||||||    
T  34995112 taggctaaaatatgcttttgatccctgc--aaatatagcgaatttgagttttg 34995162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 21994407 - 21994375
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||| ||||||||||||||||    
T  21994407 tttaggctaaaatatggttttggtccctgcaaa 21994375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 22543722 - 22543690
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||| ||||||||||||||||    
T  22543722 tttaggctaaaatatggttttggtccctgcaaa 22543690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 31848206 - 31848148
Alignment:
Q  130 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||||||    
T  31848206 ttaggctaaaatatgtttttagtccctgc--aaatatagcgaatttgggttttggtccctg 31848148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 24195606 - 24195662
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||||||||  ||||||||||| ||||||||||| ||||||    
T  24195606 aggctaaaatatgtttttggtccctgc--aaatatagcgagtttgggttttgctccctg 24195662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 25924473 - 25924415
Alignment:
Q  26 tacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 84  Q
    |||||||| |||||| ||||||| ||||||||||||||| ||||||||||| |||||||    
T  25924473 tacctttgtgtgttcattttcgtaggttgtttgagctttttgaaaataaatatgttaca 25924415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 32197971 - 32197920
Alignment:
Q  130 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||||||||||    
T  32197971 ttaggctaaaatatgcttttggtccctgc--aaatatagcgaatttgggttttg 32197920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 32196685 - 32196742
Alignment:
Q  134 gctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctgata 193  Q
    |||||||||||||||||||||||||  |||||||||| |||||| ||||| |||||||||    
T  32196685 gctaaaatatgtttttggtccctgc--aaatatagcgtatttggattttggtccctgata 32196742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 13418949 - 13419005
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||||||||  |||||| |||||||||||| ||| ||||||    
T  13418949 aggctaaaatatgtttttggtccctgc--aaatattgcgaatttgggtattggtccctg 13419005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 41693644 - 41693700
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||||||||| |||||||  |||||| |||||||||||||||| ||||||    
T  41693644 aggctaaaatatgtttttgatccctgc--aaatatggcgaatttgggttttggtccctg 41693700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 5611570 - 5611519
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggtttt 182  Q
    |||||||||||||||| |||||||||||||  ||||||||||| ||||||||||    
T  5611570 tttaggctaaaatatgattttggtccctgc--aaatatagcgagtttgggtttt 5611519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 24197164 - 24197114
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    |||||||||||||| |||||||||||||  |||||||||||||||| ||||||    
T  24197164 taggctaaaatatgcttttggtccctgc--aaatatagcgaatttgagttttg 24197114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 32544830 - 32544785
Alignment:
Q  136 taaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  32544830 taaaatatgattttggtccctgcaaa--tatagcgaatttgggttttg 32544785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 17066420 - 17066480
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||||||| ||||  |||||||  ||||||||||| ||||||||||| ||||||    
T  17066420 ttttaggctaaaatatgcttttaatccctgc--aaatatagcgagtttgggttttggtccctg 17066480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 35212067 - 35212123
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||||||||  ||||||  ||| ||||||||||| ||||||    
T  35212067 aggctaaaatatgtttttggtccctgc--aaatatgacgagtttgggttttggtccctg 35212123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 35838348 - 35838309
Alignment:
Q  122 cattaattttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  35838348 cattatttttaggctaaaatatggttttggtccctgcaaa 35838309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 161
Target Start/End: Complemental strand, 12932785 - 12932755
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||||||||||||||||||    
T  12932785 taggctaaaatatgtttttggtccctgcaaa 12932755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 25988379 - 25988413
Alignment:
Q  127 attttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||||| ||||||||||||||||    
T  25988379 attttaggctaaaatatggttttggtccctgcaaa 25988413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 31489993 - 31489946
Alignment:
Q  134 gctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    |||||||||||||||||||||||||  ||||||| ||| |||||||||||    
T  31489993 gctaaaatatgtttttggtccctgc--aaatataacgagtttgggttttg 31489946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 41695018 - 41694959
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||  |||||||  ||||||||||| |||| |||||| ||||||    
T  41695018 tttaggctaaaatatgtttttcatccctgc--aaatatagcgagtttgagttttggtccctg 41694959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 6892262 - 6892229
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaat 164  Q
    |||||||||||||| |||||||||||||||||||    
T  6892262 taggctaaaatatggttttggtccctgcaaaaat 6892229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 11767280 - 11767247
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  11767280 ttttaggctaaaatatggttttggtccctgcaaa 11767247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 23399607 - 23399640
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  23399607 ttttaggctaaaatatggttttggtccctgcaaa 23399640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 36748193 - 36748226
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||| |||||||||||||||||||||||||||||    
T  36748193 tttttggctaaaatatgtttttggtccctgcaaa 36748226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 38742184 - 38742234
Alignment:
Q  136 taaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccc 188  Q
    |||||||||||||| ||||||||  ||||||||||| ||||||||||| ||||    
T  38742184 taaaatatgtttttagtccctgc--aaatatagcgagtttgggttttggtccc 38742234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 41054241 - 41054208
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  41054241 ttttaggctaaaatatggttttggtccctgcaaa 41054208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 46759653 - 46759686
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  46759653 ttttaggctaaaatatggttttggtccctgcaaa 46759686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 3975842 - 3975810
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||| ||||||||||||||||    
T  3975842 tttaggctaaaatatggttttggtccctgcaaa 3975810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 27037905 - 27037873
Alignment:
Q  130 ttaggctaaaatatgtttttggtccctgcaaaa 162  Q
    ||||||||||||||| |||||||||||||||||    
T  27037905 ttaggctaaaatatggttttggtccctgcaaaa 27037873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 28462685 - 28462632
Alignment:
Q  135 ctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||| |||||||| |||||||  |||  ||||||||||||||||||||||    
T  28462685 ctaaaatatgcttttggtctctgcaaa--tatgacgaatttgggttttgatccctg 28462632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 43869965 - 43869916
Alignment:
Q  139 aatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||| ||||||||||||||||  |||||| ||||||||||||| ||||||    
T  43869965 aatatggttttggtccctgcaaa--tatagccaatttgggttttggtccctg 43869916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 35721094 - 35721156
Alignment:
Q  126 aattttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||| ||||||||||||||||||||||||||||  ||||||| ||||||||||||||| ||||||    
T  35721094 aattataggctaaaatatgtttttggtccctgc--aaatataacgaatttgggttttggtccctg 35721156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 37395632 - 37395688
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||||||||  |||||||||| |||||||||||| ||||||    
T  37395632 aggctaaaatatgtttttggtccctgc--aaatatagcgtatttgggttttggtccctg 37395688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 51240121 - 51240177
Alignment:
Q  135 ctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctgata 193  Q
    ||||||||||||||||||| |||||||  |||||||||||||| |||||||||||||||    
T  51240121 ctaaaatatgtttttggtctctgcaaa--tatagcgaatttggattttgatccctgata 51240177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 23470028 - 23469973
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||||||||||||||||  ||||||||||| ||| ||||||||||||||    
T  23470028 ggctaaaatatgtttttggtccctgc--aaatatagcgagtttcggttttgatccctg 23469973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 25504730 - 25504788
Alignment:
Q  26 tacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 84  Q
    |||||||| |||||||||| ||| ||||||||||||||| ||||||||||| |||||||    
T  25504730 tacctttgtgtgttcgtttccgtaggttgtttgagctttttgaaaataaatatgttaca 25504788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 27264287 - 27264220
Alignment:
Q  121 tcattaattttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||| || |||||||||||||| |||||||||||||  ||||||||||| ||||||||||| ||||||    
T  27264287 tcattatttataggctaaaatatgattttggtccctgc--aaatatagcgagtttgggttttggtccctg 27264220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 48594108 - 48594049
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctgata 193  Q
    ||||||||||||||||||||||||||   |||||| |||| |||||||||||||||||||||    
T  48594108 aggctaaaatatgtttttggtccctg--taaatatggcgagtttgggttttgatccctgata 48594049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 48598719 - 48598660
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctgata 193  Q
    ||||||||||||||||||||||||||   |||||| |||| |||||||||||||||||||||    
T  48598719 aggctaaaatatgtttttggtccctg--taaatatggcgagtttgggttttgatccctgata 48598660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 11711312 - 11711266
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 181  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  11711312 ggctaaaatatgtttttggtccctgc--aaatatagcgaatttgggttt 11711266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 26863854 - 26863915
Alignment:
Q  127 attttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||| |||||||||| ||||||||||||||||  |||||||||||||||| |||||| ||||||    
T  26863854 atttaaggctaaaatgtgtttttggtccctgc--aaatatagcgaatttgagttttggtccctg 26863915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 45979556 - 45979507
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    |||||||||||||||||||||||||||  |||||||||||||||| ||||||    
T  45979556 aggctaaaatatgtttttggtccctgc--aaatatagcgaatttgagttttg 45979507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 9774948 - 9774892
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||| |||||||||||||  ||||||||||| ||||||||||| ||||||    
T  9774948 aggctaaaatatgcttttggtccctgc--aaatatagcgagtttgggttttggtccctg 9774892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 20723748 - 20723700
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggtttt 182  Q
    |||||||||||||||||||||||||||  |||||||||||||||| |||||    
T  20723748 aggctaaaatatgtttttggtccctgc--aaatatagcgaatttgagtttt 20723700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 27262907 - 27262963
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||||||||  ||||||||||| |||| |||||| ||||||    
T  27262907 aggctaaaatatgtttttggtccctgc--aaatatagcgagtttgtgttttggtccctg 27262963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 34934810 - 34934758
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    |||||||||||||||| |||| ||||||||  |||||||||||||||||||||||    
T  34934810 tttaggctaaaatatgctttttgtccctgc--aaatatagcgaatttgggttttg 34934758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 35722348 - 35722296
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||| |||||    
T  35722348 tttaggctaaaatatgtttttggtccctg--taaatatagcgaatttggattttg 35722296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 20722472 - 20722527
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||| || ||||||||||||||||  |||||||||||||||||||| ||||||    
T  20722472 ggctaaaatgtgcttttggtccctgcaaa--tatagcgaatttgggttttggtccctg 20722527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 46075109 - 46075054
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||| |||||||  ||||||||||| ||||||||||| ||||||    
T  46075109 ggctaaaatatgtttttgatccctgc--aaatatagcgagtttgggttttggtccctg 46075054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 24609919 - 24609973
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccct 189  Q
    ||||||||||||||||||||||||||  |||||| |||| ||||||||||| |||||    
T  24609919 ggctaaaatatgtttttggtccctgc--aaatatggcgagtttgggttttggtccct 24609973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 17977619 - 17977570
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    ||||| ||||||| ||||||||||||||||  ||||||||||||||||||||    
T  17977619 aggcttaaatatggttttggtccctgcaaa--tatagcgaatttgggttttg 17977570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 35911948 - 35911899
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    ||||||||||||| |||||||||||||  ||||||||||||||||| |||||    
T  35911948 aggctaaaatatgcttttggtccctgc--aaatatagcgaatttggattttg 35911899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 2604191 - 2604135
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatc 186  Q
    |||||||||||||||||||||| ||||||||  |||||| | || ||||||||||||||    
T  2604191 ttttaggctaaaatatgtttttagtccctgc--aaatatggggagtttgggttttgatc 2604135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 15516571 - 15516610
Alignment:
Q  122 cattaattttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  15516571 cattgattttaggctaaaatatggttttggtccctgcaaa 15516610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 37396899 - 37396851
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    |||||||||||| |||||||||||||  |||||||||||||||| ||||||    
T  37396899 ggctaaaatatgcttttggtccctgc--aaatatagcgaatttgagttttg 37396851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 47038865 - 47038921
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||| ||||||||  ||||||||| | ||||||||||| ||||||    
T  47038865 aggctaaaatatgtttttagtccctgc--aaatatagctagtttgggttttggtccctg 47038921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 48334193 - 48334133
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctgata 193  Q
    |||||||||||||| |||||||||||  | |||||||||||||||| |||||| | |||||||    
T  48334193 taggctaaaatatgcttttggtccct--acaaatatagcgaatttgagttttggttcctgata 48334133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 17976761 - 17976816
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||| ||||||| ||||||| ||||||||  |||||||||||||||||||| ||||||    
T  17976761 ggcttaaatatggttttggttcctgcaaa--tatagcgaatttgggttttggtccctg 17976816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 39163087 - 39163028
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||| |||||||||||||  |||||| ||||  |||||||||| ||||||    
T  39163087 tttaggctaaaatatgcttttggtccctgc--aaatatggcgaggttgggttttggtccctg 39163028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 48589021 - 48588962
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctgata 193  Q
    ||||||||||||||||||||||||||   |||||| | || ||||||||||| |||||||||    
T  48589021 aggctaaaatatgtttttggtccctg--taaatatggtgagtttgggttttggtccctgata 48588962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 10887228 - 10887261
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  10887228 ttttaggctaaaatatggttttggtccctgcaaa 10887261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 27816774 - 27816724
Alignment:
Q  138 aaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||| ||||||||||||||||  |||||| ||||||||||||| ||||||    
T  27816774 aaatatggttttggtccctgcaaa--tatagccaatttgggttttggtccctg 27816724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 30323297 - 30323265
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||| ||||||||||||||||    
T  30323297 tttaggctaaaatatgattttggtccctgcaaa 30323265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 45380268 - 45380300
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||| ||||||||||||||||    
T  45380268 tttaggctaaaatatggttttggtccctgcaaa 45380300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 46073883 - 46073932
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggtttt 182  Q
    |||||||||||||| ||||| |||||||  ||||||||| ||||||||||||    
T  46073883 taggctaaaatatgcttttgatccctgc--aaatatagcaaatttgggtttt 46073932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 3483626 - 3483691
Alignment:
Q  126 aattttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctgata 193  Q
    |||||||| ||||||||||||||||||||||||  ||||||||||| |||| |||||| |||||||||    
T  3483626 aattttagactaaaatatgtttttggtccctgc--aaatatagcgagtttgagttttggtccctgata 3483691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 10717115 - 10717176
Alignment:
Q  127 attttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||| |||||||||||||  ||||||||||| ||||||||||| ||||||    
T  10717115 attttaggctaaaatatgcttttggtccctgc--aaatatagcgagtttgggttttggtccctg 10717176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 28998057 - 28997998
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccct 189  Q
    |||| ||||||||||||||||||||||||||  ||||||||||| ||||||||||| |||||    
T  28998057 tttttggctaaaatatgtttttggtccctgc--aaatatagcgagtttgggttttggtccct 28997998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 41847251 - 41847181
Alignment:
Q  121 tcattaattttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctgata 193  Q
    ||||| |||||||||||||||||| |||| ||| |||||||  ||||||||||||| |||||| |||||||||    
T  41847251 tcattcattttaggctaaaatatgcttttagtctctgcaaa--tatagcgaatttgagttttggtccctgata 41847181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 10718509 - 10718452
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||| |||||||||||||  ||||||||||| ||||||||||| ||||||    
T  10718509 taggctaaaatatgcttttggtccctgc--aaatatagcgagtttgggttttggtccctg 10718452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 38658475 - 38658536
Alignment:
Q  127 attttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||| || |||||| ||||||  |||||||||||||||||||| ||||||    
T  38658475 attttaggctaaaatatgcttctggtccatgcaaa--tatagcgaatttgggttttggtccctg 38658536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 4987798 - 4987857
Alignment:
Q  22 tcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgtt 81  Q
    |||||||||||| |||||||||| ||| ||||||||||||||| ||| ||||||| ||||    
T  4987798 tcggtacctttgtgtgttcgtttccgtaggttgtttgagctttttgataataaatatgtt 4987857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 22272330 - 22272274
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||| |||||||||| |||||  |||||||||||||||||||| ||||||    
T  22272330 aggctaaaatatgcttttggtccccgcaaa--tatagcgaatttgggttttggtccctg 22272274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 10292815 - 10292874
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctgata 193  Q
    ||||||||||||| ||||||||||| ||||  ||||||||||||| |||||||||| |||||    
T  10292815 aggctaaaatatgattttggtcccttcaaa--tatagcgaatttgcgttttgatccttgata 10292874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 28346768 - 28346730
Alignment:
Q  123 attaattttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  28346768 attaattttaggctaaaatatggttttggtccctgcaaa 28346730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 1420501 - 1420443
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctgata 193  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||| | ||| |||||||||    
T  1420501 ggctaaaatatgtttttggtccctgc--aaatatagcgagtttggatattggtccctgata 1420443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 4182623 - 4182677
Alignment:
Q  134 gctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||| |||||||||||| |||  |||||||||||||||||||| ||||||    
T  4182623 gctaaaatatgcttttggtccctgtaaa--tatagcgaatttgggttttggtccctg 4182677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 11019866 - 11019829
Alignment:
Q  124 ttaattttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  11019866 ttaattttaggctaaaatatggttttggtccctgcaaa 11019829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 38456791 - 38456734
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||| |||||||||||||  ||||||||| ||||| ||||||| ||||||    
T  38456791 taggctaaaatatgcttttggtccctgc--aaatatagcaaatttaggttttggtccctg 38456734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 45518021 - 45517964
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||| |||||||||||||  || |||||||| ||||||||||| ||||||    
T  45518021 taggctaaaatatgcttttggtccctgc--aagtatagcgagtttgggttttggtccctg 45517964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 22534782 - 22534726
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||| ||||| ||||||||||  |||||||| ||||||||||| ||||||    
T  22534782 aggctaaaatatgcttttgatccctgcaaa--tatagcgagtttgggttttggtccctg 22534726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 30123151 - 30123199
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggtttt 182  Q
    ||||||||||||||||||||||| |  | ||||||||||||||||||||||    
T  30123151 aggctaaaatatgtttttggtccat--acaaatatagcgaatttgggtttt 30123199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 36588221 - 36588277
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||| |||||||||||||  ||||||||||| |||| |||||| ||||||    
T  36588221 aggctaaaatatgcttttggtccctgc--aaatatagcgagtttgcgttttggtccctg 36588277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 14197824 - 14197879
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccct 189  Q
    |||||||||||||||||||||||||||  |||||| |||| ||||| ||||| |||||    
T  14197824 aggctaaaatatgtttttggtccctgc--aaatatggcgagtttggattttggtccct 14197879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 10337114 - 10337147
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  10337114 ttttaggctaaaatatggttttggtccctgcaaa 10337147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 28996835 - 28996889
Alignment:
Q  134 gctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||| |||||||||||||  |||||||| || ||||||||||| ||||||    
T  28996835 gctaaaatatgattttggtccctgc--aaatatagtgagtttgggttttggtccctg 28996889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 1376933 - 1376990
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||| ||||||| |||||||||||||  ||||||||| ||||||| ||||| ||||||    
T  1376933 taggcttaaatatgattttggtccctgc--aaatatagccaatttggattttggtccctg 1376990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 1385616 - 1385559
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||| ||||||| |||||||||||||  ||||||||| ||||||| ||||| ||||||    
T  1385616 taggcttaaatatggttttggtccctgc--aaatatagccaatttggattttggtccctg 1385559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 3512270 - 3512238
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||| ||||||||||||||||    
T  3512270 tttaggctaaaatatggttttggtccctgcaaa 3512238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 22270941 - 22270990
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggtttt 182  Q
    |||||||||||||| ||||| |||||||  ||||||||||||||||| ||||    
T  22270941 taggctaaaatatgcttttgatccctgc--aaatatagcgaatttggatttt 22270990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 30124286 - 30124254
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||| ||||||||||||||||    
T  30124286 tttaggctaaaatatgcttttggtccctgcaaa 30124254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 8935476 - 8935420
Alignment:
Q  26 tacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgtta 82  Q
    |||||||| |||||||||||||| ||||||||||||||| ||||||||||| |||||    
T  8935476 tacctttgtgtgttcgttttcgtaggttgtttgagctttttgaaaataaatatgtta 8935420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 19114843 - 19114781
Alignment:
Q  22 tcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 84  Q
    ||||| |||||| |||||||||||||| |||| |||||||||||||| ||||||| |||||||    
T  19114843 tcggttcctttgtgtgttcgttttcgtaggttatttgagctttatgagaataaatatgttaca 19114781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 49926003 - 49926061
Alignment:
Q  26 tacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 84  Q
    |||||||| |||||||||| ||| ||||||||||||||| ||||||||||| |||||||    
T  49926003 tacctttgtgtgttcgtttccgtaggttgtttgagctttttgaaaataaatatgttaca 49926061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 19648116 - 19648057
Alignment:
Q  22 tcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgtt 81  Q
    |||||||||||| |||||||||| ||| ||||||||||||||| ||| ||||||| ||||    
T  19648116 tcggtacctttgtgtgttcgtttccgtaggttgtttgagctttttgataataaatatgtt 19648057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 42359410 - 42359350
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||| ||||||||||||||||||||||||||  ||||||||||| ||||| ||||| ||||||    
T  42359410 tttttggctaaaatatgtttttggtccctgc--aaatatagcgagtttggattttggtccctg 42359350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 45619795 - 45619735
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||| ||||||||  ||||||||||| ||| ||||||| ||||||    
T  45619795 ttttaggctaaaatatgtttttagtccctgc--aaatatagcgagtttaggttttgttccctg 45619735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 3880556 - 3880501
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccct 189  Q
    ||||||||||||||||||||| |||||  ||||||||||| ||||||||||| |||||    
T  3880556 aggctaaaatatgtttttggttcctgc--aaatatagcgagtttgggttttggtccct 3880501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 22204055 - 22204102
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggtttt 182  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  22204055 ggctaaaatatgtttttggtccctgc--aaatatagcgagtttgggtttt 22204102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 32699373 - 32699319
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccct 189  Q
    |||||||||||||||||||||||||   ||||||||||| ||||||||||| |||||    
T  32699373 ggctaaaatatgtttttggtccctg--taaatatagcgagtttgggttttggtccct 32699319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 45618283 - 45618340
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||| ||||| |||||||||||||  ||||||||||| ||||||||||| ||||||    
T  45618283 taggctaatatatgcttttggtccctgc--aaatatagcgagtttgggttttggtccctg 45618340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 3879081 - 3879141
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||||||| ||||| |||||||  ||||||||||| ||||| ||||| ||||||    
T  3879081 ttttaggctaaaatatgcttttgatccctgc--aaatatagcgagtttggattttggtccctg 3879141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 33137288 - 33137240
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggtttt 182  Q
    ||||||||||||||||||| |||||||  ||||||||||| ||||||||||    
T  33137288 aggctaaaatatgtttttgatccctgc--aaatatagcgagtttgggtttt 33137240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 42358031 - 42358087
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||||||||  ||||||||  | |||| |||||||||||||    
T  42358031 aggctaaaatatgtttttggtccctgc--aaatataggaagtttgagttttgatccctg 42358087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 161
Target Start/End: Original strand, 42823769 - 42823804
Alignment:
Q  126 aattttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||||| ||||||||||||||||    
T  42823769 aattttaggctaaaatatgattttggtccctgcaaa 42823804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 44705299 - 44705347
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    ||||||||||||||||||||| ||||  |||||||| ||||||||||||||    
T  44705299 ggctaaaatatgtttttggtctctgc--aaatatagtgaatttgggttttg 44705347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 13074131 - 13074097
Alignment:
Q  127 attttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||||| ||||||||||||||||    
T  13074131 attttaggctaaaatatggttttggtccctgcaaa 13074097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 19674410 - 19674469
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||| ||||||||| |||  ||||||||||| |||| |||||| ||||||    
T  19674410 tttaggctaaaatatgcttttggtccttgc--aaatatagcgagtttgagttttggtccctg 19674469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 23657774 - 23657740
Alignment:
Q  50 ggttgtttgagctttatgaaaataaatctgttaca 84  Q
    |||||||||||||||||||||||||||| ||||||    
T  23657774 ggttgtttgagctttatgaaaataaatcagttaca 23657740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 161
Target Start/End: Complemental strand, 5259211 - 5259182
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||||||||||||||||    
T  5259211 aggctaaaatatgtttttggtccctgcaaa 5259182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 14594201 - 14594234
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  14594201 ttttaggctaaaatatggttttggtccctgcaaa 14594234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 19675679 - 19675621
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctgata 193  Q
    |||||||||||| |||||||||||||  ||||||| ||| ||||| ||||| |||||||||    
T  19675679 ggctaaaatatgcttttggtccctgc--aaatataacgagtttggattttggtccctgata 19675621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 35054660 - 35054710
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    |||| ||||||||| |||| |||||||||||  ||||||||||||||||||||    
T  35054660 taggttaaaatatgattttagtccctgcaaa--tatagcgaatttgggttttg 35054710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 35464013 - 35464046
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  35464013 ttttaggctaaaatatggttttggtccctgcaaa 35464046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 41933816 - 41933866
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    |||||||||||||| |||||||| ||||  ||||||||||| |||||||||||    
T  41933816 taggctaaaatatgattttggtctctgc--aaatatagcgagtttgggttttg 41933866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 13631224 - 13631256
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||| ||||||||||||||||    
T  13631224 tttaggctaaaatatggttttggtccctgcaaa 13631256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 14488191 - 14488159
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||| ||||||||||||||||    
T  14488191 tttaggctaaaatatggttttggtccctgcaaa 14488159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 34660988 - 34660933
Alignment:
Q  127 attttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    |||| |||||||||||||||||| ||| ||||||| |||||| |||||| |||||||    
T  34660988 atttaaggctaaaatatgttttt-gtctctgcaaatatatagggaatttaggttttg 34660933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 41324768 - 41324800
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaat 164  Q
    ||||||||||||| |||||||||||||||||||    
T  41324768 aggctaaaatatggttttggtccctgcaaaaat 41324800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 41935126 - 41935081
Alignment:
Q  136 taaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    |||||||||||||||||||||||  ||||||| ||| |||||||||||    
T  41935126 taaaatatgtttttggtccctgc--aaatataacgagtttgggttttg 41935081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 50754266 - 50754222
Alignment:
Q  123 attaattttaggctaaaatatgtttttggtccctgcaaaaatata 167  Q
    |||||||||||||||||||||| ||||| || ||||||| |||||    
T  50754266 attaattttaggctaaaatatggttttgatcactgcaaacatata 50754222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 53121292 - 53121349
Alignment:
Q  123 attaattttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggtttt 182  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  53121292 attaatttaaggctaaaatatgtttttggtccctgc--aaatatagcgagtttgggtttt 53121349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 52403192 - 52403128
Alignment:
Q  124 ttaattttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||||||||||| |||||||||||||  |||||| |||| ||||||||||| ||||||    
T  52403192 ttaattttaggctaaaatatgcttttggtccctgc--aaatatggcgagtttgggttttggtccctg 52403128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 54437528 - 54437472
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccct 189  Q
    ||||||||||||||||||||||||||||  |||||||||||||||| |||||| |||||    
T  54437528 taggctaaaatatgtttttggtccctgc--aaatatagcgaatttgagttttggtccct 54437472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 20585714 - 20585647
Alignment:
Q  122 cattaattttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctga 191  Q
    ||||| ||||||||||||||||||||||| |||||||  ||||||||||| ||||| ||||| |||||||    
T  20585714 cattatttttaggctaaaatatgtttttgatccctgc--aaatatagcgagtttggattttggtccctga 20585647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 46026071 - 46026130
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccct 189  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||    
T  46026071 ttttaggctaaaatatgtttttggtccctgc--aaatatagcgagtttggattttggtccct 46026130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 47433871 - 47433813
Alignment:
Q  130 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||| |||||| ||||||    
T  47433871 ttaggctaaaatatggttttggtccctgc--aaatatagcgaatttgagttttggtccctg 47433813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 39820665 - 39820608
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||| |||||||||||||  ||||||||||| ||||||||||| ||||||    
T  39820665 taggctaaaatatggttttggtccctgc--aaatatagcgagtttgggttttggtccctg 39820608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 52707533 - 52707594
Alignment:
Q  130 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctgata 193  Q
    ||||| ||||||||||||||||||| ||||||  ||||||||||||| |||||| |||||||||    
T  52707533 ttaggttaaaatatgtttttggtccttgcaaa--tatagcgaatttgagttttggtccctgata 52707594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 52401016 - 52401072
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||||||||  |||||| |||| ||||||||||| ||||||    
T  52401016 aggctaaaatatgtttttggtccctgc--aaatatggcgagtttgggttttggtccctg 52401072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 20488368 - 20488421
Alignment:
Q  135 ctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||||||||||||||  |||||| | |||||||||||||| ||||||    
T  20488368 ctaaaatatgtttttggtccctgc--aaatatggtgaatttgggttttggtccctg 20488421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 45268634 - 45268574
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||||||||||||  |||||||  ||||||||| | ||||||||||| ||||||    
T  45268634 ttttaggctaaaatatgtttttaatccctgc--aaatatagcaagtttgggttttggtccctg 45268574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 161
Target Start/End: Original strand, 52342188 - 52342223
Alignment:
Q  126 aattttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||||| ||||||||||||||||    
T  52342188 aattttaggctaaaatatggttttggtccctgcaaa 52342223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 52708676 - 52708628
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    |||||||||||| |||||||||||||  ||||||||||| |||||||||||    
T  52708676 ggctaaaatatgcttttggtccctgc--aaatatagcgagtttgggttttg 52708628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 26089716 - 26089758
Alignment:
Q  119 tatcattaattttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||    
T  26089716 tatcaataatttttggctaaaatatggttttggtccctgcaaa 26089758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 30128278 - 30128312
Alignment:
Q  127 attttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||||| ||||||||||||||||    
T  30128278 attttaggctaaaatatggttttggtccctgcaaa 30128312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 40476222 - 40476269
Alignment:
Q  134 gctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    |||||||||||||||||||||||||  ||||||||||| ||||| |||||    
T  40476222 gctaaaatatgtttttggtccctgc--aaatatagcgagtttggattttg 40476269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 40477434 - 40477379
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccct 189  Q
    ||||||||||||| |||||||||||||  ||||||| ||| ||||||||||| |||||    
T  40477434 aggctaaaatatgattttggtccctgc--aaatataacgagtttgggttttggtccct 40477379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 50998874 - 50998908
Alignment:
Q  123 attaattttaggctaaaatatgtttttggtccctg 157  Q
    ||||||||| |||||||||||||||||||||||||    
T  50998874 attaatttttggctaaaatatgtttttggtccctg 50998908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 12740902 - 12740935
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  12740902 ttttaggctaaaatatggttttggtccctgcaaa 12740935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 20489416 - 20489362
Alignment:
Q  134 gctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||||||  ||||||  ||| ||||||||||| ||||||    
T  20489416 gctaaaatatgtttttggtccctgc--aaatatgacgagtttgggttttggtccctg 20489362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 39132911 - 39132878
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  39132911 ttttaggctaaaatatggttttggtccctgcaaa 39132878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 40545559 - 40545592
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  40545559 ttttaggctaaaatatggttttggtccctgcaaa 40545592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 42446524 - 42446574
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    |||||||||||||| |||||||||||||  |||||| |||| |||||||||||    
T  42446524 taggctaaaatatgcttttggtccctgc--aaatatggcgagtttgggttttg 42446574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 45267306 - 45267360
Alignment:
Q  134 gctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||||||| |||||||  ||||||||||| |||| |||||| ||||||    
T  45267306 gctaaaatatgtttttgatccctgc--aaatatagcgagtttgagttttggtccctg 45267360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 47005524 - 47005491
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  47005524 ttttaggctaaaatatggttttggtccctgcaaa 47005491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 51550451 - 51550418
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  51550451 ttttaggctaaaatatggttttggtccctgcaaa 51550418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 11582 - 11526
Alignment:
Q  132 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||||||||||||||||  |||||||||| |||||||||||| ||||||    
T  11582 aggctaaaatatgtttttggtccctgc--aaatatagcgtatttgggttttggtccctg 11526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 10315 - 10363
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttg 183  Q
    |||||||||||| |||||||||||||  |||||||||||||||| ||||||    
T  10315 ggctaaaatatgcttttggtccctgc--aaatatagcgaatttgagttttg 10363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 119593 - 119648
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||| |||||||||||||  |||||||||||||||| |||||| ||||||    
T  119593 ggctaaaatatgcttttggtccctgc--aaatatagcgaatttgagttttggtccctg 119648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 121044 - 120989
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||| |||||||||||||  ||||||| ||| ||||||||||| ||||||    
T  121044 ggctaaaatatgcttttggtccctgc--aaatataacgagtttgggttttggtccctg 120989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 30968 - 30911
Alignment:
Q  131 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||||| |||||||||||||  |||||||| || ||||||||||| ||||||    
T  30968 taggctaaaatatggttttggtccctgc--aaatatagtgagtttgggttttggtccctg 30911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 9917 - 9977
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    ||||||||||||||||| ||||| |||||||  ||||||||||| ||||| ||||| ||||||    
T  9917 ttttaggctaaaatatgcttttgatccctgc--aaatatagcgagtttggattttggtccctg 9977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0765 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 1863 - 1914
Alignment:
Q  136 taaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccct 189  Q
    ||||||||| |||||||||||||  ||||||||||| |||| ||||||||||||    
T  1863 taaaatatgattttggtccctgc--aaatatagcgagtttgagttttgatccct 1914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 490 - 435
Alignment:
Q  133 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttttgatccctg 190  Q
    |||||||||||| |||||||||||||  |||||||| || ||||||||||| ||||||    
T  490 ggctaaaatatgattttggtccctgc--aaatatagtgagtttgggttttggtccctg 435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 2665 - 2632
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  2665 ttttaggctaaaatatggttttggtccctgcaaa 2632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 223177 - 223144
Alignment:
Q  128 ttttaggctaaaatatgtttttggtccctgcaaa 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  223177 ttttaggctaaaatatggttttggtccctgcaaa 223144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 27368 - 27336
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||| ||||||||||||||||    
T  27368 tttaggctaaaatatggttttggtccctgcaaa 27336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 75768 - 75736
Alignment:
Q  129 tttaggctaaaatatgtttttggtccctgcaaa 161  Q
    |||||||||||||||| ||||||||||||||||    
T  75768 tttaggctaaaatatggttttggtccctgcaaa 75736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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