View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10194_low_24 (Length: 239)

Name: NF10194_low_24
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10194_low_24
NF10194_low_24
[»] chr3 (1 HSPs)
chr3 (1-224)||(36744636-36744855)
[»] chr2 (2 HSPs)
chr2 (22-81)||(42688089-42688148)
chr2 (25-82)||(42693651-42693708)
[»] chr8 (12 HSPs)
chr8 (22-81)||(6263797-6263856)
chr8 (23-81)||(6451379-6451437)
chr8 (23-81)||(6457568-6457626)
chr8 (24-82)||(6289527-6289585)
chr8 (24-82)||(6321909-6321967)
chr8 (24-82)||(6332483-6332541)
chr8 (26-82)||(6275040-6275096)
chr8 (27-82)||(6391484-6391539)
chr8 (26-82)||(6363675-6363731)
chr8 (27-82)||(6410646-6410701)
chr8 (28-81)||(6370575-6370628)
chr8 (26-82)||(6424566-6424622)
[»] chr5 (1 HSPs)
chr5 (26-92)||(9604084-9604150)
[»] chr7 (1 HSPs)
chr7 (20-81)||(46710884-46710945)
[»] chr1 (2 HSPs)
chr1 (22-72)||(47128441-47128491)
chr1 (20-81)||(36924580-36924641)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 36744636 - 36744855
Alignment:
Q  1 ttatttgaaatttacagctgataagtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatccatgtgtgattcaacgactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36744636 ttatttgaaatttacagctgataagtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatccatgtgtgattcaaagactt 36744735  T
Q  101 caagtaagataaaactaaaagtagcatataattcttaatttctaaatttgtaattcttcctcatatgtaattattttcattgattaatgaatgaatgata 200  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    |||||||||||    
T  36744736 caagtaagataaaacaaaaagtagcatataattcttaatttgtaaatttgtaattcttcctcatatgacattattttcattgatt----aatgaatgata 36744831  T
Q  201 ggtgtttccacccgaaagcaagct 224  Q
    ||||||||||||||||||||||||    
T  36744832 ggtgtttccacccgaaagcaagct 36744855  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 42688089 - 42688148
Alignment:
Q  22 taagtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcc 81  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  42688089 taagtctgcatggatgacagatgaagagtttgcaagagaaatgcttgctggtgtaaatcc 42688148  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 42693708 - 42693651
Alignment:
Q  25 gtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcca 82  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  42693708 gtctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatcca 42693651  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 6263856 - 6263797
Alignment:
Q  22 taagtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcc 81  Q
    |||||||||||||||||||||||| ||||||| |||||| || |||||||||||||||||    
T  6263856 taagtctgcatggatgactgatgatgaatttggaagagagattcttgctggtgtaaatcc 6263797  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 6451437 - 6451379
Alignment:
Q  23 aagtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcc 81  Q
    |||||||||||||  |||||||||||||||| |||||| ||||||||||||||||||||    
T  6451437 aagtctgcatggaatactgatgaagaatttggaagagagatgcttgctggtgtaaatcc 6451379  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 6457626 - 6457568
Alignment:
Q  23 aagtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcc 81  Q
    ||||||||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||    
T  6457626 aagtctgcatggatgacagatgaagaatttggaagagagatggttgctggtgtaaatcc 6457568  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 6289585 - 6289527
Alignment:
Q  24 agtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcca 82  Q
    |||||| |||||||||||||||||||||| ||||||| ||| |||||||||| ||||||    
T  6289585 agtctggatggatgactgatgaagaatttacaagagagatgattgctggtgtgaatcca 6289527  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 6321967 - 6321909
Alignment:
Q  24 agtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcca 82  Q
    ||||||| |||||||||||||||||||||||||| || ||| |||||||||| ||||||    
T  6321967 agtctgcgtggatgactgatgaagaatttgcaagggagatgattgctggtgtgaatcca 6321909  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 6332541 - 6332483
Alignment:
Q  24 agtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcca 82  Q
    ||||||||||||||||||||| |||||||||||| || ||| |||||||||| ||||||    
T  6332541 agtctgcatggatgactgatggagaatttgcaagggagatgattgctggtgtgaatcca 6332483  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 6275096 - 6275040
Alignment:
Q  26 tctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcca 82  Q
    |||| |||||||||||| ||||||||| ||||||| ||| |||||||||||||||||    
T  6275096 tctggatggatgactgacgaagaatttacaagagagatgattgctggtgtaaatcca 6275040  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 6391539 - 6391484
Alignment:
Q  27 ctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcca 82  Q
    ||||||||||||||||||| ||||||||||| || ||| |||||||||| ||||||    
T  6391539 ctgcatggatgactgatgaggaatttgcaagggagatgattgctggtgtgaatcca 6391484  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 6363731 - 6363675
Alignment:
Q  26 tctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcca 82  Q
    |||||||||||||||||||| ||||||||||| || ||| ||||||| || ||||||    
T  6363731 tctgcatggatgactgatgaggaatttgcaagggagatgattgctggggtgaatcca 6363675  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 6410701 - 6410646
Alignment:
Q  27 ctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcca 82  Q
    ||||||||||||||||||| ||||| |||||||| ||  |||||||||| ||||||    
T  6410701 ctgcatggatgactgatgaggaattcgcaagagagataattgctggtgtgaatcca 6410646  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 6370628 - 6370575
Alignment:
Q  28 tgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcc 81  Q
    |||||||||| ||||||| |||||||||||| | ||| |||||||||| |||||    
T  6370628 tgcatggatggctgatgaggaatttgcaagacagatgattgctggtgtgaatcc 6370575  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 6424622 - 6424566
Alignment:
Q  26 tctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcca 82  Q
    ||||| |||||||||||||| ||||||||||| || ||| ||||||| || ||||||    
T  6424622 tctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatcca 6424566  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 9604084 - 9604150
Alignment:
Q  26 tctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatccatgtgtgattc 92  Q
    |||||||||||||||||||||||||||| |||||| ||| ||||||| ||||| || ||||||||||    
T  9604084 tctgcatggatgactgatgaagaatttggaagagagatggttgctggagtaaacccttgtgtgattc 9604150  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 46710945 - 46710884
Alignment:
Q  20 gataagtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcc 81  Q
    ||||| ||||||||||  ||||||||||||||||| ||||||||||| ||||||||||||||    
T  46710945 gataaatctgcatggagaactgatgaagaatttgctagagaaatgctggctggtgtaaatcc 46710884  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 47128491 - 47128441
Alignment:
Q  22 taagtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctgg 72  Q
    |||| ||||||||| ||||||||| || |||| ||||||||||||||||||    
T  47128491 taagactgcatggaggactgatgaggagtttggaagagaaatgcttgctgg 47128441  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 36924580 - 36924641
Alignment:
Q  20 gataagtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcc 81  Q
    ||||| ||||||||||  |||||||||||||| || || || ||||| ||||||||||||||    
T  36924580 gataaatctgcatggagaactgatgaagaattcgctagggagatgctggctggtgtaaatcc 36924641  T

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