View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10194_low_25 (Length: 237)

Name: NF10194_low_25
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10194_low_25
NF10194_low_25
[»] chr1 (2 HSPs)
chr1 (13-212)||(36526475-36526674)
chr1 (13-230)||(37923814-37924029)
[»] chr5 (2 HSPs)
chr5 (18-237)||(4430469-4430689)
chr5 (28-231)||(23269746-23269949)
[»] chr2 (3 HSPs)
chr2 (45-217)||(10785850-10786022)
chr2 (46-237)||(40728381-40728566)
chr2 (97-217)||(13019138-13019258)
[»] chr8 (1 HSPs)
chr8 (28-237)||(29468540-29468749)
[»] scaffold0305 (1 HSPs)
scaffold0305 (61-213)||(18846-18998)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 36526674 - 36526475
Alignment:
Q  13 cacagacaagagaattggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgt 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36526674 cacagacaagagaagtggattagaccagtagctggggaagtgaagtgcaatgtcgacgcagcaatttttaaggattaaggatgttatggggtcggtatgt 36526575  T
Q  113 gtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagc 212  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36526574 gtctaagaggtgatcgatgggagttcattaaagcgaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagctagaggtctaaaagaagc 36526475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 37924029 - 37923814
Alignment:
Q  13 cacagacaagagaattggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgt 112  Q
    ||||||||| || | |||| || ||| ||||  |||||||||||||||||||| |||||| |||||||||||||  |||| |||||  | ||||||||||    
T  37924029 cacagacaaaaggagtggactaaaccggtagtcggggaagtgaagtgcaatgttgatgcaacaatttttaaggaacaaggttgtta--gagtcggtatgt 37923932  T
Q  113 gtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagc 212  Q
    |||||||||| |||||| ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37923931 gtctaagaggggatcgaggggagttcattaaagcaaagacaacatagtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagc 37923832  T
Q  213 gataatgtggcttggtac 230  Q
    |||||  |||||||||||    
T  37923831 gataaaatggcttggtac 37923814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 4430469 - 4430689
Alignment:
Q  18 acaagagaattggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtcta 117  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||| |||||||||||||||||||||||||||||    
T  4430469 acaagagaggtggattagaccagtagctggggaagtgaagtgcaatgttgatgcgacaatttttaaggatcaaggatgttatggggtcggtatgtgtcta 4430568  T
Q  118 agaggtg-atcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgata 216  Q
    ||||||| |||||  |||||||||| ||||||| ||| | ||||||||| ||||||||||||||||||||||| |||||  |||||||||| ||||||||    
T  4430569 agaggtgtatcgagaggagttcatttaagcaaatacatcatggtacaaaagtctcccacaacccaaagaagcataagcagaaggtctaaaataagcgata 4430668  T
Q  217 atgtggcttggtactatgagg 237  Q
    || ||||||| ||||||||||    
T  4430669 atatggcttgatactatgagg 4430689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 23269746 - 23269949
Alignment:
Q  28 tggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatc 127  Q
    ||||||||| |  |||||| |||||||||||| |||||||| ||  |||| ||||||||| |||| ||||||||| | | ||||||  | | ||| ||||    
T  23269746 tggattagatcgttagctgcggaagtgaagtgtaatgtcgacgcgacaatctttaaggatcaaggttgttatgggattgatatgtgcttgacaggggatc 23269845  T
Q  128 gatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttgg 227  Q
    || |||||||||| | ||| |||||||| ||||||| ||||||| | |||||||| || || ||||||||||||||||||||||||| || |||||||||    
T  23269846 gaggggagttcatgagagcgaagacagcttggtacagaggtctctctcaacccaatgaggcggaagcaagaggtctaaaagaagcgagaaagtggcttgg 23269945  T
Q  228 tact 231  Q
    ||||    
T  23269946 tact 23269949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 45 - 217
Target Start/End: Original strand, 10785850 - 10786022
Alignment:
Q  45 tggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaa 144  Q
    ||||||||||||||| ||||| ||| || |||||||||||||  |||| ||||||||| ||||||||||| | ||||| |||||| |||||||||||| |    
T  10785850 tggggaagtgaagtgtaatgttgatacaacaatttttaaggaacaaggttgttatgggatcggtatgtgtttgagaggggatcgaggggagttcattaga 10785949  T
Q  145 gcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataa 217  Q
    || |||||| | |||||||||||  |||||||||||||||||| | |||||||||||||||||||| ||||||    
T  10785950 gcgaagacaacttggtacaaaggcatcccacaacccaaagaagtaaaagcaagaggtctaaaagaaacgataa 10786022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 46 - 237
Target Start/End: Complemental strand, 40728566 - 40728381
Alignment:
Q  46 ggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatg---ttatggggtcggtatgtgtctaagaggtgatcgatgggagttcatta 142  Q
    ||||| ||||||| |||||| |||||| |||||||||||||| ||||| |   |||||||||||| ||||| ||||||||      ||   |||||||||    
T  40728566 ggggaggtgaagtacaatgtagatgcaacaatttttaaggatcaaggaggcggttatggggtcggaatgtgcctaagagg------at---agttcatta 40728476  T
Q  143 aagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgagg 237  Q
     ||| |||||| | ||||| | |||||||| | ||||||||||||||||||||||||||||||| ||||||| ||  ||| |||||||| |||||    
T  40728475 gagccaagacatcttggtatacaggtctccaataacccaaagaagcagaagcaagaggtctaaaggaagcgacaaaatggtttggtactttgagg 40728381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 217
Target Start/End: Complemental strand, 13019258 - 13019138
Alignment:
Q  97 tatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaa 196  Q
    ||||||||||| ||| |||| ||||| ||| || ||||||||||||  || |||||| | ||||  ||||| ||||||||| |||| || ||||||||||    
T  13019258 tatggggtcggcatgcgtcttagaggggattgaggggagttcattagggcgaagacaacttggtttaaaggcctcccacaatccaacgaggcagaagcaa 13019159  T
Q  197 gaggtctaaaagaagcgataa 217  Q
    | ||| |||||||||||||||    
T  13019158 gtggtttaaaagaagcgataa 13019138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 29468749 - 29468540
Alignment:
Q  28 tggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaattttt-aaggattaaggatgttatggggtcggtatgtgtctaagaggtgat 126  Q
    ||||||||||| |||||  | || ||| | ||||||||||| |||| ||||||| |||||| || ||||||||||| || | ||||| |||||||| |      
T  29468749 tggattagaccggtagccagtgaggtggattgcaatgtcgacgcagtaattttttaaggatcaatgatgttatggg-tcagaatgtgcctaagaggggtg 29468651  T
Q  127 cgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttg 226  Q
    ||| |||||||||||  ||| |||||| | ||||| ||||||||||||||||| ||||||||  ||||| ||||||||||| |||  |||| ||||||||    
T  29468650 cgaggggagttcattggagcgaagacaacttggtataaaggtctcccacaacctaaagaagcgaaagcacgaggtctaaaaaaagaaataaagtggcttg 29468551  T
Q  227 gtactatgagg 237  Q
    ||||| |||||    
T  29468550 gtactttgagg 29468540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 213
Target Start/End: Complemental strand, 18998 - 18846
Alignment:
Q  61 aatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaa-agcaaagacagcgtgg 159  Q
    ||||||||| || ||||||| ||||| |||||||||| | ||||||  |||||||| ||||| |||| | |||||| ||||   ||| |||||| | |||    
T  18998 aatgtcgatacaacaatttt-aaggagtaaggatgttgttgggtcgacatgtgtcttagaggggatcaaggggagtacattgggagcgaagacaacttgg 18900  T
Q  160 tacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcg 213  Q
    |  |||||||||||||||||||| || ||  ||||||||||| |||||||||||    
T  18899 tttaaaggtctcccacaacccaatgaggcgtaagcaagaggtttaaaagaagcg 18846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University