View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10194_low_26 (Length: 237)
Name: NF10194_low_26
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10194_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1606417 - 1606198
Alignment:
| Q |
1 |
cgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606417 |
cgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaatt |
1606318 |
T |
|
| Q |
101 |
agggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttca |
200 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1606317 |
agggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggcaggccttggcaacaatattcaagagttatggtgatgaaaactttca |
1606218 |
T |
|
| Q |
201 |
tggacactttagtgagcccc |
220 |
Q |
| |
|
||||||||||||| |||||| |
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| T |
1606217 |
tggacactttagtaagcccc |
1606198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1623539 - 1623320
Alignment:
| Q |
1 |
cgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaatt |
100 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1623539 |
cgcaagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgacccattccaaaacactggaatttcattccacaattgtcaaatt |
1623440 |
T |
|
| Q |
101 |
agggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttca |
200 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| | |
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| T |
1623439 |
agggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggccttggcaacaattctcaagagttatggtgatgaaaactttta |
1623340 |
T |
|
| Q |
201 |
tggacactttagtgagcccc |
220 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
1623339 |
tggacactttagtgagcccc |
1623320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 10820983 - 10821202
Alignment:
| Q |
1 |
cgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaatt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10820983 |
cgcaagaaaacctttagatggccaagctaacatgatcactgcccaaggtcgaggtgatccattccaaaacactggaatttcattccacaattgtcaaatt |
10821082 |
T |
|
| Q |
101 |
agggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttca |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||| | |
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|
| T |
10821083 |
agggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttaggaagaccttggcaacaatattcaagagttatggtgatgaaaactttta |
10821182 |
T |
|
| Q |
201 |
tggacactttagtgagcccc |
220 |
Q |
| |
|
||||||||||||| |||||| |
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|
| T |
10821183 |
tggacactttagtcagcccc |
10821202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1629715 - 1629496
Alignment:
| Q |
1 |
cgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaatt |
100 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1629715 |
cgcaagaaagcctttagatggccaagcaaacatgatcactgcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaatt |
1629616 |
T |
|
| Q |
101 |
agggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttca |
200 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| | |
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|
| T |
1629615 |
agggctgcatcagatctaaaacctgttgttgacaagtacaaaaccttcttgggcagaccttggcaacaatattcaagagtaatggtgatgaaaactttta |
1629516 |
T |
|
| Q |
201 |
tggacactttagtgagcccc |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
1629515 |
tggacactttagtgagcccc |
1629496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 18781233 - 18781014
Alignment:
| Q |
1 |
cgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaatt |
100 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18781233 |
cgcaagaaagcctttagatggccaagcaaacatgatcacggcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaatt |
18781134 |
T |
|
| Q |
101 |
agggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttca |
200 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
18781133 |
atggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggcaggccttggcaacaatattcaagagttatggtgatgaaaactttta |
18781034 |
T |
|
| Q |
201 |
tggacactttagtgagcccc |
220 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
18781033 |
tggacactttagtgagcccc |
18781014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 12802777 - 12802596
Alignment:
| Q |
23 |
caagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagc |
122 |
Q |
| |
|
||||| ||||||||||| ||||||||||| | ||||||||| ||||||||||||||||| | ||||| | ||| |||||||| || | ||| | |||| |
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| T |
12802777 |
caagcaaacatgatcacggcccaaggtcgtgatgacccatttcaaaacactggaatttcgattcacaactctcagattagggccgcgccagatttcaagc |
12802678 |
T |
|
| Q |
123 |
ctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatgga |
204 |
Q |
| |
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| ||||| | || | ||| ||||||||||| |||| |||||| ||| || |||||| |||| |||||| | |||||||| |
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|
| T |
12802677 |
ccgttgtcgggaaattcaacaccttcttgggccggccctggcaaagatactctagagttgtggtcatgaaatcattcatgga |
12802596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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