View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10194_low_31 (Length: 227)

Name: NF10194_low_31
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10194_low_31
NF10194_low_31
[»] chr6 (4 HSPs)
chr6 (155-208)||(12908409-12908462)
chr6 (155-208)||(12933488-12933541)
chr6 (1-50)||(12900573-12900622)
chr6 (155-208)||(12949853-12949904)
[»] chr5 (2 HSPs)
chr5 (17-66)||(10761940-10761989)
chr5 (21-64)||(10605805-10605848)
[»] chr2 (1 HSPs)
chr2 (155-208)||(17922320-17922371)


Alignment Details
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 12908409 - 12908462
Alignment:
Q  155 tcaaatctttattaaactatgtgtttaattcctaagcatcttaaactttgtttg 208  Q
    |||||||||||||||| |||||||| |||||||||| |||||||||||||||||    
T  12908409 tcaaatctttattaaaatatgtgttcaattcctaagtatcttaaactttgtttg 12908462  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 12933488 - 12933541
Alignment:
Q  155 tcaaatctttattaaactatgtgtttaattcctaagcatcttaaactttgtttg 208  Q
    |||||||||||||||| |||||||| |||||||||| |||||||||||||||||    
T  12933488 tcaaatctttattaaaatatgtgttcaattcctaagtatcttaaactttgtttg 12933541  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 12900573 - 12900622
Alignment:
Q  1 tggaatcacatgttgaaatgcttagtttactagtttgttattctctaaat 50  Q
    ||||||||||||  | ||||||||||||||||||||||||||||||||||    
T  12900573 tggaatcacatgcggcaatgcttagtttactagtttgttattctctaaat 12900622  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 12949853 - 12949904
Alignment:
Q  155 tcaaatctttattaaactatgtgtttaattcctaagcatcttaaactttgtttg 208  Q
    ||||||||||||||||  ||||||||||||| |||| || ||||||||||||||    
T  12949853 tcaaatctttattaaa--atgtgtttaattcataagtatattaaactttgtttg 12949904  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 10761989 - 10761940
Alignment:
Q  17 aatgcttagtttactagtttgttattctctaaattctggtagaaacattt 66  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||    
T  10761989 aatgcttagtttactagtttgttattcacttaattctggtagaaacattt 10761940  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 10605805 - 10605848
Alignment:
Q  21 cttagtttactagtttgttattctctaaattctggtagaaacat 64  Q
    ||||||||||||||||||||||| || |||||||||||||||||    
T  10605805 cttagtttactagtttgttattcactgaattctggtagaaacat 10605848  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 17922371 - 17922320
Alignment:
Q  155 tcaaatctttattaaactatgtgtttaattcctaagcatcttaaactttgtttg 208  Q
    ||||||||||||||||  ||||||||||||| |||| || ||||||||||||||    
T  17922371 tcaaatctttattaaa--atgtgtttaattcataagtatattaaactttgtttg 17922320  T

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