View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10194_low_34 (Length: 219)
Name: NF10194_low_34
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10194_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 28668441 - 28668641
Alignment:
| Q |
1 |
ttcattcctcattggtgtcctttgattattaaagatttggaaatcatacagcaggccctagttgctactaatgtcgatgatgaagaggggtatactaatg |
100 |
Q |
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| T |
28668441 |
ttcattccgcatcggtgtcctttgattattaaagatttggaaatcatacagcaggccctggttgctactaatgtcgatgatgaagaggggtatactaatg |
28668540 |
T |
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| Q |
101 |
ttgtgtccaagagcaaccggaaaaagaataaaggctatcaaacccgctcgaagggtccgtggcagctatttatgcacattttgtttggcgtactttaggt |
200 |
Q |
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| T |
28668541 |
ttgtgtccaagagcaaccggaaaaagaataaaggctatcaaacccgctcgaagggtccatggcagttatttatgcgcattttgtttggcgtactttaggt |
28668640 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
28668641 |
t |
28668641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 17112072 - 17112213
Alignment:
| Q |
16 |
tgtcctttgattattaaagatttggaaatcatacagcaggccctagttgctactaatgtcgatgatgaagaggggtatactaatgttgtgtccaagagca |
115 |
Q |
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| T |
17112072 |
tgtcctttgattactaaagatttggagatcatacaacaggccctggttgtttataatgatgttgatgaggaggggtttactactgttgtgtccaagagca |
17112171 |
T |
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| Q |
116 |
accggaaaaagaataaaggctatcaaacccgctcgaagggtcc |
158 |
Q |
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| T |
17112172 |
acc-gaaaaagaataaaggctatcaaacccgttccaagggtcc |
17112213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 17257676 - 17257805
Alignment:
| Q |
31 |
aaagatttggaaatcatacagcaggccctagttgctactaatgtcgatgatgaagaggggtatactaatgttgtgtccaagagcaaccggaaaaagaata |
130 |
Q |
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| T |
17257676 |
aaagatttggagacaattcaacaggccgtagtcgttactattgttgatgatgaagaggggtttactaaggttgtttccaagagcagccgaaagaagaaga |
17257775 |
T |
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| Q |
131 |
aaggctatcaaacccgctcgaagggtccgt |
160 |
Q |
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| T |
17257776 |
aatgctatcaaacccgctccaggggtccgt |
17257805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 16176241 - 16176144
Alignment:
| Q |
52 |
caggccctagttgctactaatgtcgatgatgaagaggggtatactaatgttgtgtccaagagcaaccggaaaaagaataaaggctatcaaacccgctc |
149 |
Q |
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| T |
16176241 |
caggccctggttgtttctaatgtggctgataaggaggggtataccattgttatttccaagagcaaccggaagaagaataaaagttatcaaacccgctc |
16176144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 36471300 - 36471382
Alignment:
| Q |
78 |
tgatgaagaggggtatactaatgttgtgtccaagagcaaccggaaaaagaataaaggctatcaaacccgctcgaagggtccgt |
160 |
Q |
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| T |
36471300 |
tgatgaggaggggtttactgctgttgtttccaagcgcaaccagaagaagcaaaaatgttatcaaacccgctccaagggtccgt |
36471382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 23646901 - 23646983
Alignment:
| Q |
78 |
tgatgaagaggggtatactaatgttgtgtccaagagcaaccggaaaaagaataaaggctatcaaacccgctcgaagggtccgt |
160 |
Q |
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| T |
23646901 |
tgatgaggaggggtttactaatgttgtttccaagagcaaccggaagaagcaaaaaggttatcaaacccgatccaagggtccgt |
23646983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 3702360 - 3702282
Alignment:
| Q |
78 |
tgatgaagaggggtatactaatgttgtgtccaagagcaaccggaaaaagaataaaggctatcaaacccgctcgaagggtc |
157 |
Q |
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| T |
3702360 |
tgatgaggaggggtttactaccgttgcgtccaagagcaaccggaaaaaggataaagactat-aaacccgttccaagggtc |
3702282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 14783741 - 14783802
Alignment:
| Q |
99 |
tgttgtgtccaagagcaaccggaaaaagaataaaggctatcaaacccgctcgaagggtccgt |
160 |
Q |
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| T |
14783741 |
tgttgtttccaagagcaaccagaataagaaaaaaggttattaaacccgctccaagggtccgt |
14783802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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