View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10194_low_4 (Length: 443)
Name: NF10194_low_4
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10194_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 49271767 - 49272205
Alignment:
| Q |
1 |
aagaagaataatggctctcgataaataaagtgtgacctatatgacataagttttagattttatggaaataaatttatcttttttaaacctctggcacaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49271767 |
aagaagaataatggctctcgataaataaagtgtgacctatatgacataagttttagattttatggaaataaatttaacttttttaaacctctggcacaac |
49271866 |
T |
|
| Q |
101 |
cgtcttctcattctaaactttcttgttgaacttccctttaccaagattgaaacttatgtctcttccaaagcattatatagtcatgtcctccatttgtcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271867 |
cgtcttctcattctaaactttcttgttgaacttcccttaaccaagattgaaacttatgtctcttccaaagcattatatagtcatgtcctccatttgtcaa |
49271966 |
T |
|
| Q |
201 |
ggaaaattcattttcaagtgaatatggtactttgcctttgaatttgtgtccatcagttaactttgtctctgaattttttaaaatagataaatggtctctc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271967 |
ggaaaattcattttcaagtgaatatggtactttgcctttgaatttgtgtccatcagttaactttgtctctgaattttttaaaatagataaatggtctctc |
49272066 |
T |
|
| Q |
301 |
aattgtttcatgtccatcagatgagtttcttcgtcaagtccaatttgatacctaaatttgtgagcactaaagatgctttggtatccctcttttccaatgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49272067 |
aattgtttcatgtccatcagatgagtttcttcgtcaagtccaatttgatacctaaatttgtgagcactaaagatgctttggtatccctcttttccaatgt |
49272166 |
T |
|
| Q |
401 |
tatttaccctaaagtgtctcttcttccttctgatgtcca |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
49272167 |
tatttaccctaaagtgtctcttcttccttctaatgtcca |
49272205 |
T |
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