View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10194_low_5 (Length: 436)
Name: NF10194_low_5
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10194_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Original strand, 6174041 - 6174447
Alignment:
| Q |
17 |
aataactgctagggggagaatgtttgttatagtgcttggcaacaacggcaaacagtggaagcgttaatataattaaccactagcacagcatatacttaaa |
116 |
Q |
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| T |
6174041 |
aataactgctagggggagaatgtttgttatagtgcttggcaacaacggcaaacagtggaagcgttaatataattaaccactagcacagcatatacttaaa |
6174140 |
T |
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| Q |
117 |
aaccagtgattgttctgtaaacattggtttaaataataaggaaatgcattctttgtagcatgagtgtatgatttcgagtttaaacattaaattaagatga |
216 |
Q |
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| T |
6174141 |
aaccagtgattgttctgtaaacattggtttaaataataaggaaatgcattctttgtagcatgagtgtatgatttcgagtttaaacattaaattaagatga |
6174240 |
T |
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| Q |
217 |
tgatgtgcctcatgtggtatacgacacgtagtgtagagcgtgcagctctagtccactcgactgacatggcagaaacaggaacacgattagaagcaaaaca |
316 |
Q |
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| T |
6174241 |
tgatgtgcctcatgtggtatacgacacgtagtgtagagcgtgcagctctagtccactcgactgacatggcagaaacaggaacaccattagaagcaaaaca |
6174340 |
T |
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| Q |
317 |
gcaataacaagaggaagaacagtagcaagactgtttatttgtggttcttaaggttaaaaatagttacttatccatccgtcatttcccgtcttatattaac |
416 |
Q |
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| T |
6174341 |
gc---aacaagaggaagaacagtagcaagactgtttatttgtggttcttaaggttaaaaatagttacttatccatccgtcatttcccgtcttatattaac |
6174437 |
T |
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| Q |
417 |
tactcctttg |
426 |
Q |
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|||||||||| |
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| T |
6174438 |
tactcctttg |
6174447 |
T |
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