View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10194_low_6 (Length: 431)
Name: NF10194_low_6
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10194_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 114 - 417
Target Start/End: Complemental strand, 49164212 - 49163909
Alignment:
| Q |
114 |
ctgagagtgaatgtattgatagtatatagtataggtagatcagatagagatagagagaccacaagaataggagtgggaccatatgtaagggaatggggac |
213 |
Q |
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| T |
49164212 |
ctgagagtgaatgcattgatagtatatagtataggtagattagatagagatagagagaccacaagaataggagtgggaccatatgtaagggaatggggac |
49164113 |
T |
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| Q |
214 |
acatacaattatacaaattaaccagattactggaaaaggaacattattcagtggtggcgagtttaccaaaataattccatttgagatgnnnnnnnnnnnn |
313 |
Q |
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| T |
49164112 |
acatacaattatacaaatcaaccagattactggaaaaggaacattattcggtggtggcgagtttaccaaaataattccatttgagatgtatatataacta |
49164013 |
T |
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| Q |
314 |
nnnnnnnggggcacagtatggaggtggggaaggaaggaagcaaaatcaaatgagtatatatgtaggccaaataatagtagctgcatgcagcttgcagcta |
413 |
Q |
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| T |
49164012 |
tatatatggggcacagtatggaggtggggaaggaaggaagcaaaatcaaatgagtatatatgtaggccaaataatagcagctgcatgcagcttgcagcta |
49163913 |
T |
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| Q |
414 |
taat |
417 |
Q |
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|||| |
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| T |
49163912 |
taat |
49163909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 49164340 - 49164247
Alignment:
| Q |
11 |
agagagagacggaaagaaaagaaagggtaccaaaatggtgaaaactaccctttagcgttagaagaagatagcgatgtatatatgacaaatgaaa |
104 |
Q |
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| T |
49164340 |
agagagagacggaaagaaaagaaagggtaccaaaatggtgaaaactaccctttagcgttagaagaagatagcgatgtatatatgacaaatgaaa |
49164247 |
T |
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