View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10194_low_8 (Length: 367)
Name: NF10194_low_8
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10194_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 41978812 - 41978475
Alignment:
| Q |
20 |
attatctattagacatagttactcctagatttgttttagatgttagtcaaatacgtcagtgtgttaaagaactcaattgagtggattttataatttagta |
119 |
Q |
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| T |
41978812 |
attatctattagacatagttactcctagatttgttttagatgttagtcaaatacgtcagtgtgttaaagaactcaattgagtggattttataatttagta |
41978713 |
T |
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| Q |
120 |
atcagtttccaatattttcacccatttagaagtcacacattttgtcatccatcatcatatactgaatacggtttatattcagagtctttatgnnnnnnnn |
219 |
Q |
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| T |
41978712 |
atcagtttccaatattttcacccatttagaagtcacacattttgtcatccatcatcatatactgaatacggtatatattcagagtctatatttttttttt |
41978613 |
T |
|
| Q |
220 |
cacacatatctttactaggtttaaaatgcctgaatttaaactccaaagtcatttacaatttataaaatgcatgtatatcatctatactgaaaataaccct |
319 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41978612 |
cacacatatctgtactaggtttaaaatgcctgaatttaaactccaaagtcatttacaatttataaaatgcatgtatatcatctatactgaaaataaccct |
41978513 |
T |
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| Q |
320 |
aaacaaccatgaagtgttgctcaataaatgggcctttg |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
41978512 |
aaacaaccatgaagtgttgctcaataaatgggcctttg |
41978475 |
T |
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