View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10194_low_9 (Length: 363)

Name: NF10194_low_9
Description: NF10194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10194_low_9
NF10194_low_9
[»] chr2 (2 HSPs)
chr2 (16-348)||(9574150-9574482)
chr2 (20-137)||(9565289-9565406)
[»] chr3 (3 HSPs)
chr3 (181-283)||(10533485-10533587)
chr3 (75-165)||(8045214-8045304)
chr3 (213-283)||(22949570-22949640)
[»] chr1 (2 HSPs)
chr1 (105-283)||(25623847-25624025)
chr1 (210-270)||(5417079-5417139)
[»] scaffold0009 (1 HSPs)
scaffold0009 (181-283)||(91801-91903)
[»] chr4 (3 HSPs)
chr4 (181-283)||(47249575-47249677)
chr4 (194-242)||(42336435-42336483)
chr4 (213-283)||(3955185-3955255)
[»] chr6 (2 HSPs)
chr6 (54-132)||(28495210-28495288)
chr6 (54-132)||(29807619-29807697)


Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 9574150 - 9574482
Alignment:
Q  16 gtccctttgtgaagataatagcaaatcgataatgatagggaacatgtaagactggcacttgaccgtgagaaactttttcacacaagaagtgtatattcat 115  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  9574150 gtccctttgtgaagatgttagcaaatcgataatgatagggaacatgtaagactcgcacttgaccatgagaaactttttcacacaagaagtgtatattcat 9574249  T
Q  116 ttcaatgtatttggtgtgttattgttgaactgaattgtcggatagatacattgcagcaacattaacacaatataccaaagtagcttttgtaaccggacaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9574250 ttcaatgtatttggtgtgttattgttgaactgaattgtcggatagatacattgcagcaacattaacacaatataccaaagtagcttttgtaactggacaa 9574349  T
Q  216 tgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggtactctgcacttaatcgaggcaaggcataatgtattt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9574350 tgtagttctaaaagtaagtttctaatcaagcaagatttagacagaacattagctactcctcgatactctgcacttaatcgaggcaaggcataatgtattt 9574449  T
Q  316 ttgcataataagagatcaaattatcaccaatat 348  Q
    ||||||||||||||||||| |||||||||||||    
T  9574450 ttgcataataagagatcaagttatcaccaatat 9574482  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 9565289 - 9565406
Alignment:
Q  20 ctttgtgaagataatagcaaatcgataatgatagggaacatgtaagactggcacttgaccgtgagaaactttttcacacaagaagtgtatattcatttca 119  Q
    ||||||||||||  |||||||||||||| || | | ||||||| ||||| ||||||||| | ||||||||||||| | |||||||||||| ||||| |||    
T  9565289 ctttgtgaagatgttagcaaatcgataaggacatgaaacatgttagactcgcacttgactgggagaaactttttcgcccaagaagtgtatgttcatatca 9565388  T
Q  120 atgtatttggtgtgttat 137  Q
    |||| |||||||||||||    
T  9565389 atgtgtttggtgtgttat 9565406  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 10533485 - 10533587
Alignment:
Q  181 cacaatataccaaagtagcttttgtaaccggacaatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggta 280  Q
    ||||||| |||||||| ||| |||| || || ||||||||||| || ||||||||||||||| | ||||||| ||| || ||||| || ||||| |||||    
T  10533485 cacaataaaccaaagtggctgttgtgactgggcaatgtagttccaacagtaagtttctaatccaacaagattcagatactacattggcgactccgcggta 10533584  T
Q  281 ctc 283  Q
    |||    
T  10533585 ctc 10533587  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 8045304 - 8045214
Alignment:
Q  75 tgaccgtgagaaactttttcacacaagaagtgtatattcatttcaatgtatttggtgtgttattgttgaactgaattgtcggatagataca 165  Q
    |||||| ||| ||||||||| | ||  ||||||||||  ||||| |||| ||||||| |||  |||||||||| |||||||||||||||||    
T  8045304 tgaccgcgagtaactttttcccgcacaaagtgtatatcaatttcgatgtgtttggtgcgttgatgttgaactggattgtcggatagataca 8045214  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 22949640 - 22949570
Alignment:
Q  213 caatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggtactc 283  Q
    ||||||||||| || ||||||||||||||| | ||||||| ||| || ||||| || ||||| ||||||||    
T  22949640 caatgtagttccaacagtaagtttctaatccaacaagattcagatactacattggcgactccgcggtactc 22949570  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 283
Target Start/End: Original strand, 25623847 - 25624025
Alignment:
Q  105 tgtatattcatttcaatgtatttggtgtgttattgttgaactgaattgtcggatagatacattgcagcaacattaacacaatataccaaagtagcttttg 204  Q
    ||||||||||| || |||| ||||||| |||  ||||| ||||  ||| |||||| ||| |  |||   |||||| ||||||| |||||||||| | |||    
T  25623847 tgtatattcatctcgatgtgtttggtgcgttgatgttggactgggttgccggataaatagacagcactcacattatcacaataaaccaaagtagatgttg 25623946  T
Q  205 taaccggacaatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggtactc 283  Q
    | || || ||||||||||| || ||||||||||||||| | ||||||| ||| || ||||| |  ||||| ||||||||    
T  25623947 tgactgggcaatgtagttccaacagtaagtttctaatccaacaagattcagatactacattggtgactccgcggtactc 25624025  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 5417079 - 5417139
Alignment:
Q  210 ggacaatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagcta 270  Q
    ||||||||||||||| ||||| ||||||||||| | || |||| | |||| ||||||||||    
T  5417079 ggacaatgtagttctgaaagttagtttctaatccaacatgattcaaacactacattagcta 5417139  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 283
Target Start/End: Complemental strand, 91903 - 91801
Alignment:
Q  181 cacaatataccaaagtagcttttgtaaccggacaatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggta 280  Q
    ||||||| |||| ||| ||| |||| || || ||||||||||| || ||||||||||||||| | ||||||| ||| || ||||| || ||||| |||||    
T  91903 cacaataaaccagagtggctgttgtgactgggcaatgtagttccaacagtaagtttctaatccaacaagattcagatactacattggcgactccgcggta 91804  T
Q  281 ctc 283  Q
    |||    
T  91803 ctc 91801  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 47249575 - 47249677
Alignment:
Q  181 cacaatataccaaagtagcttttgtaaccggacaatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggta 280  Q
    ||||||| |||| ||||| | |||| || || ||||||||||| || ||||||||||||||| | ||||||| ||| || ||||| || ||||| |||||    
T  47249575 cacaataaaccatagtagatgttgtgactgggcaatgtagttccaacagtaagtttctaatccaacaagattcagatactacattggcgactccgcggta 47249674  T
Q  281 ctc 283  Q
    |||    
T  47249675 ctc 47249677  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 42336483 - 42336435
Alignment:
Q  194 agtagcttttgtaaccggacaatgtagttctaaaagtaagtttctaatc 242  Q
    ||||||||||||||| | |||||||| ||||||||||||| ||||||||    
T  42336483 agtagcttttgtaacagaacaatgtatttctaaaagtaagattctaatc 42336435  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 3955255 - 3955185
Alignment:
Q  213 caatgtagttctaaaagtaagtttctaatcaagcaagatttagacacaacattagctactcctcggtactc 283  Q
    ||||||||||| || ||||||||||||||| | ||||||||||| || ||||| || |||||  |||||||    
T  3955255 caatgtagttccaacagtaagtttctaatccaacaagatttagatactacattggcgactccgtggtactc 3955185  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 28495210 - 28495288
Alignment:
Q  54 ggaacatgtaagactggcacttgaccgtgagaaactttttcacacaagaagtgtatattcatttcaatgtatttggtgt 132  Q
    ||||||||||| ||  |||| |||||| ||| ||||| ||| ||||  |||||||||| ||||||||||| ||||||||    
T  28495210 ggaacatgtaatacatgcacctgaccgcgagcaacttcttcccacacaaagtgtatatccatttcaatgtgtttggtgt 28495288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 29807619 - 29807697
Alignment:
Q  54 ggaacatgtaagactggcacttgaccgtgagaaactttttcacacaagaagtgtatattcatttcaatgtatttggtgt 132  Q
    ||||||||||| ||  |||| |||||| ||| ||||| ||| ||||  |||||||||| ||||||||||| ||||||||    
T  29807619 ggaacatgtaatacatgcacctgaccgcgagcaacttcttcccacacaaagtgtatatccatttcaatgtgtttggtgt 29807697  T

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