View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10195_high_1 (Length: 463)
Name: NF10195_high_1
Description: NF10195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10195_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Original strand, 47754525 - 47754955
Alignment:
| Q |
16 |
cacagaccgaagttcatgaatataatcatagtactaatgtatcgagccagaccaatggagaagccgctgaagcgcaaaaggacaacgaaaataatgattc |
115 |
Q |
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| T |
47754525 |
cacagaccgaagttcatgaatataatcatagtactaatgtatcgagccagaccaatggagaagccgctgaagcgcaaaaggacaacgaaaataatgattc |
47754624 |
T |
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| Q |
116 |
aaaatggaagatggttttgcagcaacagcaatcaaatagttgtgatcaaaaaatcattgtgaattctgatggaagttacaagacttctgatttctctatg |
215 |
Q |
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| T |
47754625 |
aaaatggaagatggttttgcaacaacagcaatcaaatagttgtgatcaaaaaatcattgtgaattctgatggaagttacaagaattctgattactctatg |
47754724 |
T |
|
| Q |
216 |
tcattacaagaccttgttggtattaattcagttggtttggatgattctaccaaaatagggacacatttttcaaatccatcatcattggtgacaagtttaa |
315 |
Q |
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| T |
47754725 |
tcattacaagaccttgttggtattaattcagttggtttggatgattctaccaaaatagggacacatttttcaaatccatcatcattggtgacaagtttaa |
47754824 |
T |
|
| Q |
316 |
gtagttcaagagaagctagtcctgataaaactgctccctcactactctttccaaagccttcaatggaatcaaaaattgccactaatgttgctgttagttc |
415 |
Q |
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| T |
47754825 |
gtagttcaagagaagctagtcctgataaaactgctccctcactactctttccaaagccttcaatggaatcaaaaattgccactaatgttgctgttagttc |
47754924 |
T |
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| Q |
416 |
ttggtttcctacacaaatgaggccagcatct |
446 |
Q |
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| T |
47754925 |
ttggtttcctacacaaatgaggccagcatct |
47754955 |
T |
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