View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10195_high_13 (Length: 213)
Name: NF10195_high_13
Description: NF10195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10195_high_13 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-103; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 10866957 - 10866745
Alignment:
| Q |
1 |
tctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacaacgggggctctggtcattccgtctcggagcacaacggcagaagcaccac |
100 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||| |
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| T |
10866957 |
tctaaaaagaatttcaactgggaagctcttttggcagagttgaatcttacaacgggggctctggtcattccgtcgcggagcacaaccgcggaagccccac |
10866858 |
T |
|
| Q |
101 |
cggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10866857 |
cggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaa |
10866758 |
T |
|
| Q |
201 |
aggaccggcaaca |
213 |
Q |
| |
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||||||||||||| |
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| T |
10866757 |
aggaccggcaaca |
10866745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 10873348 - 10873560
Alignment:
| Q |
1 |
tctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacaacgggggctctggtcattccgtctcggagcacaacggcagaagcaccac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| ||||| |||||||| |||||||||| |
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| T |
10873348 |
tctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacgactggggctcgggtcattccgtcacggaggacaacggcggaagcaccac |
10873447 |
T |
|
| Q |
101 |
cggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10873448 |
cggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaa |
10873547 |
T |
|
| Q |
201 |
aggaccggcaaca |
213 |
Q |
| |
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||||||||||||| |
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| T |
10873548 |
aggaccggcaaca |
10873560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 10878419 - 10878631
Alignment:
| Q |
1 |
tctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacaacgggggctctggtcattccgtctcggagcacaacggcagaagcaccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| ||||| |||||||| |||||||||| |
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| T |
10878419 |
tctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacgactggggctcgggtcattccgtcacggaggacaacggcggaagcaccac |
10878518 |
T |
|
| Q |
101 |
cggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10878519 |
cggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaa |
10878618 |
T |
|
| Q |
201 |
aggaccggcaaca |
213 |
Q |
| |
|
||||||||||||| |
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|
| T |
10878619 |
aggaccggcaaca |
10878631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 10883490 - 10883702
Alignment:
| Q |
1 |
tctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacaacgggggctctggtcattccgtctcggagcacaacggcagaagcaccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| ||||| |||||||| |||||||||| |
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| T |
10883490 |
tctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacgactggggctcgggtcattccgtcacggaggacaacggcggaagcaccac |
10883589 |
T |
|
| Q |
101 |
cggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10883590 |
cggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaa |
10883689 |
T |
|
| Q |
201 |
aggaccggcaaca |
213 |
Q |
| |
|
||||||||||||| |
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|
| T |
10883690 |
aggaccggcaaca |
10883702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 10887408 - 10887620
Alignment:
| Q |
1 |
tctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacaacgggggctctggtcattccgtctcggagcacaacggcagaagcaccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| | |
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| T |
10887408 |
tctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacaacgggggctctggtcattccgtcgcggagcacaacagcggaagcacctc |
10887507 |
T |
|
| Q |
101 |
cggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10887508 |
cggaaacataaatagctttacagcctctgttggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtattcattcccgtcgagcaacaa |
10887607 |
T |
|
| Q |
201 |
aggaccggcaaca |
213 |
Q |
| |
|
||||||||||||| |
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| T |
10887608 |
aggaccggcaaca |
10887620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 10046577 - 10046366
Alignment:
| Q |
1 |
tctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacaacgggggctctggtcattccgtctcggagcacaacggcagaagcaccac |
100 |
Q |
| |
|
|||||||| || || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || || ||||| ||||| || |||||||||| |
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|
| T |
10046577 |
tctaaaaaaaactttaactgagaagctcttttagcggagttgaatcttacgacgggggctctggtcatgccatcacggaggacaaccgcggaagcaccac |
10046478 |
T |
|
| Q |
101 |
cggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || |||||||||||||||||||| || |||||||| |||||||||||||| ||||| || |||||||| |
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| T |
10046477 |
cggaaacataaatagctttacaacctctattagtacttgcaaccaaacaaccttccgtcgttgccatcggcaccgtgtactctttcccatcaagcaacaa |
10046378 |
T |
|
| Q |
201 |
aggaccggcaac |
212 |
Q |
| |
|
||| |||||||| |
|
|
| T |
10046377 |
aggtccggcaac |
10046366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 39676518 - 39676309
Alignment:
| Q |
4 |
aaaaagaatttcaactgagaagctcttttggcggagttgaatcttacaacgggggctctggtcattccgtctcggagcacaacggcagaagcaccaccgg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| || || || ||||| || ||||||||||| | |
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|
| T |
39676518 |
aaaaagaatttcaactgagaagctcttttagcggagttgaatcttacgacaggagctctggtcattccatcacgaaggacaactgccgaagcaccaccag |
39676419 |
T |
|
| Q |
104 |
aaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaagg |
203 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| || |||||||| ||||| ||||| || || || |||||||||||||| |
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|
| T |
39676418 |
aaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaagg |
39676319 |
T |
|
| Q |
204 |
accggcaaca |
213 |
Q |
| |
|
|||||||||| |
|
|
| T |
39676318 |
accggcaaca |
39676309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 37948325 - 37948263
Alignment:
| Q |
93 |
agcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttc |
155 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||||| || || ||||||||||| ||||| |
|
|
| T |
37948325 |
agcaccaccagaaacatatatagctttacaccctctattagtactagcaaccaaacacccttc |
37948263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 183
Target Start/End: Original strand, 30709435 - 30709569
Alignment:
| Q |
49 |
acaacgggggctctggtcattccgtctcggagcacaacggcagaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaac |
148 |
Q |
| |
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||||| || |||||||||||||| |||| |||| ||| | |||||| ||||| ||||||| |||||||||||| |||||||| || |||||||| | || |
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| T |
30709435 |
acaacaggtgctctggtcattccatctctaagcaaaacagaagaagctccaccagaaacatgaatagctttacaccctctattagtacttgcaacaagac |
30709534 |
T |
|
| Q |
149 |
aaccttcggttgttgccatgggcaccgtgtactca |
183 |
Q |
| |
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| ||||| || || ||||||||||| ||||||||| |
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|
| T |
30709535 |
acccttcagtggtagccatgggcacagtgtactca |
30709569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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