View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10195_high_6 (Length: 298)
Name: NF10195_high_6
Description: NF10195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10195_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 52938951 - 52938675
Alignment:
| Q |
18 |
agtttatattacaccattgatatattattttatttaatcaatggtctagatctaggattggttacatgttaacaacttttcggcactgctcacagaatnn |
117 |
Q |
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| T |
52938951 |
agtttatattacaccgttgatatattattttatttaatcaatggtctagatctaggattggttacctgttaacaactttttagcactgctcacaaaataa |
52938852 |
T |
|
| Q |
118 |
nnnnnngaaatcccacacttaattgttta---------atgcttttgtttataccgtgtatgggctatttttatcgggtgataacatgcactaatggacc |
208 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
52938851 |
aaaaa-gaaatcccacacttaattgtttatacatataaatgcttttgtttatactgtgtatgggctatttttatcggatgataacatgcactaatggtcc |
52938753 |
T |
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| Q |
209 |
aagcaagcatatttaaaatccaaaaggaaattaggaatgttcatttgcagcaatcaaattgccaccgtcgtcccttca |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52938752 |
aagcaagcatatttaaaatccaaaaggaaattaggaatgttcatttgcagcaatcaaattgccaccgtcgtcccttca |
52938675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 50423261 - 50423442
Alignment:
| Q |
18 |
agtttatattacaccattgatatattattttatttaatcaatggtctagatctaggattggttacatgttaacaacttttcggcactgctcacagaatnn |
117 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||| ||| || | ||||||| || ||||||||||| |||| |||||||| ||| |
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| T |
50423261 |
agtttattttacaccattgatatattattttatttattcaatggtctggatttaaaactggttacctgctaacaactttttggcattgctcacaaaataa |
50423360 |
T |
|
| Q |
118 |
nnnnnngaaatcccacacttaattgttt---------aatgcttttgtttataccgtgtatgggctatttttatcgggtgataa |
192 |
Q |
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| T |
50423361 |
aataa--aaaccccacacttaattgtttatacatataaatgcttttgtttatactgtgtatgggctatttttatcgggtgataa |
50423442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 7943196 - 7943377
Alignment:
| Q |
18 |
agtttatattacaccattgatatattattttatttaatcaatggtctagatctaggattggttacatgttaacaacttttcggcactgctcacagaatnn |
117 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |||||||||| ||| || | ||||||| || ||||||||||| |||| |||||||| ||| |
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| T |
7943196 |
agtttattttacaccattgatatattattttatttattcaatggtctggatttaaaactggttacctgctaacaactttttggcattgctcacaaaataa |
7943295 |
T |
|
| Q |
118 |
nnnnnngaaatcccacacttaattgttt---------aatgcttttgtttataccgtgtatgggctatttttatcgggtgataa |
192 |
Q |
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| T |
7943296 |
aataa--aaaccccacacttaattgtttatacatataaatgcttttgtttatactgtgtatgggctgtttttatcgggtgataa |
7943377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 44344876 - 44344969
Alignment:
| Q |
18 |
agtttatattacaccattgatatattattttatttaatcaatggtctagatctaggattggttacatgttaacaacttttcggcactgctcaca |
111 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||| || ||||||||||| |||| |||||||| |
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| T |
44344876 |
agtttattttacaccattgatatattattttatttattcaatggtctagatttagaactggttacctgctaacaactttttggcattgctcaca |
44344969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 5536766 - 5536685
Alignment:
| Q |
17 |
aagtttatattaca-ccattgatatattattttatttaatcaatggtctagatctaggattggttacatgttaacaactttt |
97 |
Q |
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|||||||| ||||| |||| ||||||||||||||||||||||| |||| ||||||| |||||||||| | ||| |||||||| |
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| T |
5536766 |
aagtttatgttacaaccatagatatattattttatttaatcaacggtccagatctaagattggttacctcttagcaactttt |
5536685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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