View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10195_high_8 (Length: 251)
Name: NF10195_high_8
Description: NF10195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10195_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 10343750 - 10343552
Alignment:
| Q |
26 |
tggtgcataaaacaatagtaatgtaattcagttttgtctttagatggtggaattaacaccaccactactactagtactagttgtaatatgaaggattatc |
125 |
Q |
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| T |
10343750 |
tggtgcatgaaacaatagtaatgtaattcagttttgtctttagatggtggaattaacaccaccactactactagtactagttgtactatgaaggattatc |
10343651 |
T |
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| Q |
126 |
attggcatgataatttatcaatcaagagaaacagatcacctataggggatagttctagtcaaggttcacaaggtgatggaacctctagcagaagatgcat |
225 |
Q |
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| T |
10343650 |
attggcatgataacttatcaatcaagagatatatatcacctatatgagagagttctagtcaaggttcgcaaggcgacgg-acctctagcagaagacgcat |
10343552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 10181092 - 10181249
Alignment:
| Q |
65 |
ttagatggtggaattaacaccaccactactactagtactagttgtaatatgaaggattatcattggcatgataatttatcaatcaagagaaacagatcac |
164 |
Q |
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| T |
10181092 |
ttagatagtgcaactaacaccaccactaataatactactagtagtactatgaatgatgatcagtggcctgataatttatcaatcaagagaagtagatcac |
10181191 |
T |
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| Q |
165 |
ctataggggatagttctagtcaaggttcacaaggtgatggaacctctagcagaagatg |
222 |
Q |
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| T |
10181192 |
ctaaaggagaaagttatagtcaagattcacaaactggtggaaccactagaagaagatg |
10181249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 10182308 - 10182201
Alignment:
| Q |
35 |
aaacaatagtaatgtaattcagttttgtctttagatggtggaattaacaccaccactactactagtactagttgtaatatgaaggattatcattggcatg |
134 |
Q |
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| T |
10182308 |
aaacaatagtaatgtcattccattttgtatttagatggtagaattaacaccaccactactaatactagtagtagcactatgaaggaatattagcggcatg |
10182209 |
T |
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| Q |
135 |
ataattta |
142 |
Q |
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| T |
10182208 |
ataattta |
10182201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 10181758 - 10181675
Alignment:
| Q |
149 |
aagagaaacagatcacctataggggatagttctagtcaaggttcacaaggtgatggaacctctagcagaagatgcataattcct |
232 |
Q |
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| T |
10181758 |
aagagaagtagatcaccaaaaggagaaagttctagtcaagattcacaagctgatggaacctctagcagaagacgcgtaattcct |
10181675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 10343009 - 10343158
Alignment:
| Q |
82 |
caccaccactactactagtactagttgtaatatgaaggattatcattggcatgataatttatcaatcaagagaaacagatcacctataggggatagttct |
181 |
Q |
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| T |
10343009 |
caccactactactattagtagtagttgtactatgaattatgatcagtgacatgataatttattgattaagagaagtagatcacttagaggtgagagttat |
10343108 |
T |
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| Q |
182 |
agtcaaggttcacaaggtgatggaacctctagcagaagatgcataattcc |
231 |
Q |
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| T |
10343109 |
agttaatgttcacaagctagtggaatctccagcagaagaagcgtaattcc |
10343158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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