View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10195_high_9 (Length: 240)
Name: NF10195_high_9
Description: NF10195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10195_high_9 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 10873136 - 10873359
Alignment:
| Q |
17 |
acctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcact |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10873136 |
acctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcact |
10873235 |
T |
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| Q |
117 |
tatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10873236 |
tatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaa |
10873335 |
T |
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| Q |
217 |
ttttgaggatcttctaaaaagaat |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
10873336 |
ttttgaggatcttctaaaaagaat |
10873359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 10878207 - 10878430
Alignment:
| Q |
17 |
acctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcact |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10878207 |
acctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcact |
10878306 |
T |
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| Q |
117 |
tatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaa |
216 |
Q |
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| T |
10878307 |
tatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaa |
10878406 |
T |
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| Q |
217 |
ttttgaggatcttctaaaaagaat |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
10878407 |
ttttgaggatcttctaaaaagaat |
10878430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 10883278 - 10883501
Alignment:
| Q |
17 |
acctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcact |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10883278 |
acctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcact |
10883377 |
T |
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| Q |
117 |
tatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10883378 |
tatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaa |
10883477 |
T |
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| Q |
217 |
ttttgaggatcttctaaaaagaat |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
10883478 |
ttttgaggatcttctaaaaagaat |
10883501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 10867174 - 10866946
Alignment:
| Q |
19 |
ctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcactta |
118 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
10867174 |
ctagtgtacaaattctttcctgccatagtagctttaatactctgtaatcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaaacaatta |
10867075 |
T |
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| Q |
119 |
tccaaatga---gtaatttcaacaaa----atttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaat |
211 |
Q |
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| ||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10867074 |
ttcaaatgactagtaatttcaacaaataaaatttaaagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaat |
10866975 |
T |
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| Q |
212 |
caaaattttgaggatcttctaaaaagaat |
240 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
10866974 |
caaaattttgaggatcttctaaaaagaat |
10866946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 10887195 - 10887419
Alignment:
| Q |
19 |
ctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcactta |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
10887195 |
ctagtgtataaattctttcctgccatagtagctttaatactctgtaatcttgcaaatctacttgacctaaataaatattgcagagaaaatcaatcagtta |
10887294 |
T |
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| Q |
119 |
tccaaat---gagtaatttcaac----aaaatttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaat |
211 |
Q |
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||||||| |||||||||||| |||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10887295 |
tccaaataagtagtaatttcaacaaataaaatttaaagtgaaaccgaagaaagttcaaaattgaaaa----ttacttgttgaaagtgtgagagagggaat |
10887390 |
T |
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| Q |
212 |
caaaattttgaggatcttctaaaaagaat |
240 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
10887391 |
caaaattttgaggatcttctaaaaagaat |
10887419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 39676717 - 39676510
Alignment:
| Q |
19 |
ctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcactta |
118 |
Q |
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|||||||||||||||||||| || ||||||||||||||| | |||| |||||||||||||||||||||||||| ||||| | | ||||||||| | ||| |
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| T |
39676717 |
ctagtgtataaattctttcctgctatagtagctttaatattttgtaatcttgcaaatctacttgacctaaatatatatccaaaacaaaatcaattaatta |
39676618 |
T |
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| Q |
119 |
tccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaatt |
218 |
Q |
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||||||||||| |||||||||||| || ||| ||||||||| |||| ||||||||||||||| || ||||||| |||||||||||| |
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| T |
39676617 |
tccaaatgagtcatttcaacaaaaatt--------------caaaattcaaaattcaaaaatacttacttgttgaatgtatgagagatggaatcaaaatt |
39676532 |
T |
|
| Q |
219 |
ttgaggatcttctaaaaagaat |
240 |
Q |
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| |||||||||| ||||||||| |
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| T |
39676531 |
tagaggatcttccaaaaagaat |
39676510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 10046623 - 10046570
Alignment:
| Q |
183 |
ttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaa |
236 |
Q |
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| T |
10046623 |
ttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaa |
10046570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 10046815 - 10046746
Alignment:
| Q |
23 |
tgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataa |
92 |
Q |
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|||||||||||||||| ||||| || ||||||||| |||||| ||| ||||||||||||||||| ||||| |
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| T |
10046815 |
tgtataaattctttcctgccattgttgctttaatattctgtaatctcgcaaatctacttgacctgaataa |
10046746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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