View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10195_low_10 (Length: 294)

Name: NF10195_low_10
Description: NF10195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10195_low_10
NF10195_low_10
[»] chr8 (5 HSPs)
chr8 (16-280)||(38102011-38102277)
chr8 (183-252)||(44327540-44327609)
chr8 (183-222)||(5920868-5920907)
chr8 (183-252)||(7409377-7409446)
chr8 (183-252)||(38137430-38137499)
[»] chr1 (5 HSPs)
chr1 (187-247)||(46518620-46518680)
chr1 (129-178)||(40152821-40152870)
chr1 (200-252)||(40152701-40152753)
chr1 (129-179)||(22023243-22023293)
chr1 (183-228)||(22023146-22023191)
[»] chr4 (5 HSPs)
chr4 (198-252)||(45073188-45073242)
chr4 (178-252)||(55583711-55583785)
chr4 (183-227)||(56027748-56027792)
chr4 (128-182)||(56027841-56027895)
chr4 (128-179)||(55583832-55583883)
[»] chr3 (4 HSPs)
chr3 (129-179)||(2392076-2392126)
chr3 (129-179)||(2393839-2393889)
chr3 (183-252)||(27844701-27844770)
chr3 (206-250)||(9429938-9429982)
[»] chr2 (7 HSPs)
chr2 (183-252)||(4964145-4964214)
chr2 (183-240)||(29923943-29924000)
chr2 (190-247)||(9372002-9372059)
chr2 (183-252)||(14922765-14922834)
chr2 (198-234)||(14389308-14389344)
chr2 (183-226)||(5357650-5357693)
chr2 (211-247)||(22990106-22990142)
[»] chr6 (1 HSPs)
chr6 (183-252)||(33929955-33930024)
[»] chr7 (4 HSPs)
chr7 (128-178)||(6687686-6687736)
chr7 (183-252)||(25103639-25103707)
chr7 (201-252)||(33575466-33575517)
chr7 (129-179)||(25103538-25103588)
[»] chr5 (1 HSPs)
chr5 (198-245)||(41733006-41733053)


Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 38102011 - 38102277
Alignment:
Q  16 cactatgctgccacatattatgttatttaattaatccatgtatttatgtccccaacggatggttttctatatgcgttgtaatttgagcttatgctttcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38102011 cactatgctgccacatattatgttatttaattaatccatgtatttatgtccccaacggatggttttctatatgcgttgtaatttgggcttatgctttcaa 38102110  T
Q  116 gcctatctaacctgaagattgctattgacactttaggtttgactgaaaaacacaagtaaaagac--aaataactgccgatgggattatattggtaaatta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||  ||||||||||||||||    
T  38102111 gcctatctaacctgaagattgctattgacactttaggtttgactgaaaaacacaagtaaaagacaaaaataactgtcgatggagttatattggtaaatta 38102210  T
Q  214 ctggtgtttttcagccaaacaccatgtgtgaacagcatttatcatctaatctctttcgtgccctatg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  38102211 ctggtgtttttcagccaaacaccatgtgtgaacagcatttatcatctaatctctttcatgccttatg 38102277  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 44327540 - 44327609
Alignment:
Q  183 taactgccgatgggattatattggtaaattactggtgtttttcagccaaacaccatgtgtgaacagcatt 252  Q
    |||||||| ||| | |||||||| ||||||||| |||||||||| |||||||  ||||||||||| ||||    
T  44327540 taactgccaatgaggttatattgataaattacttgtgtttttcaaccaaacattatgtgtgaacaacatt 44327609  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 5920868 - 5920907
Alignment:
Q  183 taactgccgatgggattatattggtaaattactggtgttt 222  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  5920868 taactgccgatgagattatattggtaaagtactggtgttt 5920907  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 7409446 - 7409377
Alignment:
Q  183 taactgccgatgggattatattggtaaattactggtgtttttcagccaaacaccatgtgtgaacagcatt 252  Q
    |||||| ||||||  |||||||| ||||||  || |||||||||||||||||| | ||||||||| ||||    
T  7409446 taactgtcgatggagttatattgataaattggtgatgtttttcagccaaacactacgtgtgaacaacatt 7409377  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 38137499 - 38137430
Alignment:
Q  183 taactgccgatgggattatattggtaaattactggtgtttttcagccaaacaccatgtgtgaacagcatt 252  Q
    ||||| |||||| | ||||||| ||||||||||||| |||||| |||||||  ||||||| |||| ||||    
T  38137499 taactaccgatgaggttatatttgtaaattactggtatttttcggccaaaccacatgtgtcaacaacatt 38137430  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 46518680 - 46518620
Alignment:
Q  187 tgccgatgggattatattggtaaattactggtgtttttcagccaaacaccatgtgtgaaca 247  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  46518680 tgccgatggaattatattggtaaattactggtgtttttcaaccaaacactatgtgtgaaca 46518620  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 40152870 - 40152821
Alignment:
Q  129 gaagattgctattgacactttaggtttgactgaaaaacacaagtaaaaga 178  Q
    |||||||| | ||||||||||||||||| |||||||||||||||||||||    
T  40152870 gaagattgttgttgacactttaggtttggctgaaaaacacaagtaaaaga 40152821  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 40152753 - 40152701
Alignment:
Q  200 atattggtaaattactggtgtttttcagccaaacaccatgtgtgaacagcatt 252  Q
    ||||||||||||||||| ||||||||| || ||||| ||||||||||| ||||    
T  40152753 atattggtaaattactgatgtttttcaaccgaacacaatgtgtgaacaacatt 40152701  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 22023293 - 22023243
Alignment:
Q  129 gaagattgctattgacactttaggtttgactgaaaaacacaagtaaaagac 179  Q
    |||||||||| ||||||||||||||||| || || ||||| ||||||||||    
T  22023293 gaagattgctgttgacactttaggtttggctcaagaacaccagtaaaagac 22023243  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 22023191 - 22023146
Alignment:
Q  183 taactgccgatgggattatattggtaaattactggtgtttttcagc 228  Q
    |||||||||||| | |||||| ||||||||||||||||||| ||||    
T  22023191 taactgccgatgaggttatataggtaaattactggtgttttccagc 22023146  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 45073242 - 45073188
Alignment:
Q  198 ttatattggtaaattactggtgtttttcagccaaacaccatgtgtgaacagcatt 252  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  45073242 ttatattggtaaattactggtgttttccagccaaacaccatgtgtgaacaacatt 45073188  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 55583785 - 55583711
Alignment:
Q  178 acaaataactgccgatgggattatattggtaaattactggtgtttttcagccaaacaccatgtgtgaacagcatt 252  Q
    |||| ||||| || ||||| ||||||||||||||||||| |||||||||||||||||  ||||||||||| ||||    
T  55583785 acaattaactaccaatggggttatattggtaaattactgatgtttttcagccaaacattatgtgtgaacaacatt 55583711  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 56027792 - 56027748
Alignment:
Q  183 taactgccgatgggattatattggtaaattactggtgtttttcag 227  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||    
T  56027792 taactgccgatggaattatattggtaagttactggtgtttttcag 56027748  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 56027895 - 56027841
Alignment:
Q  128 tgaagattgctattgacactttaggtttgactgaaaaacacaagtaaaagacaaa 182  Q
    ||||||||| | |||||||||||| ||||  ||||||||||||||||||||||||    
T  56027895 tgaagattgttgttgacactttagatttgtttgaaaaacacaagtaaaagacaaa 56027841  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 55583883 - 55583832
Alignment:
Q  128 tgaagattgctattgacactttaggtttgactgaaaaacacaagtaaaagac 179  Q
    ||||||||| | ||||||||||| ||||| ||||||| ||||||||||||||    
T  55583883 tgaagattgttgttgacactttatgtttggctgaaaagcacaagtaaaagac 55583832  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 2392076 - 2392126
Alignment:
Q  129 gaagattgctattgacactttaggtttgactgaaaaacacaagtaaaagac 179  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  2392076 gaagattgttattgacactttaggtttggctgaaaaacacaagtaaaagac 2392126  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 2393839 - 2393889
Alignment:
Q  129 gaagattgctattgacactttaggtttgactgaaaaacacaagtaaaagac 179  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  2393839 gaagattgttattgacactttaggtttggctgaaaaacacaagtaaaagac 2393889  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 27844701 - 27844770
Alignment:
Q  183 taactgccgatgggattatattggtaaattactggtgtttttcagccaaacaccatgtgtgaacagcatt 252  Q
    ||||||||||||  ||||||||| |||||||||| |||||||||| ||||||| ||| ||||||| ||||    
T  27844701 taactgccgatgaaattatattgataaattactgatgtttttcagtcaaacactatgcgtgaacaacatt 27844770  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 9429938 - 9429982
Alignment:
Q  206 gtaaattactggtgtttttcagccaaacaccatgtgtgaacagca 250  Q
    |||| ||||| |||||| |||||||||||||||||| ||||||||    
T  9429938 gtaatttacttgtgtttctcagccaaacaccatgtgggaacagca 9429982  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 4964145 - 4964214
Alignment:
Q  183 taactgccgatgggattatattggtaaattactggtgtttttcagccaaacaccatgtgtgaacagcatt 252  Q
    |||||||||||| ||||||||| |||||||||||||||||| ||||||||||  || |||||||| ||||    
T  4964145 taactgccgatgagattatattagtaaattactggtgttttccagccaaacattatttgtgaacaacatt 4964214  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 29923943 - 29924000
Alignment:
Q  183 taactgccgatgggattatattggtaaattactggtgtttttcagccaaacaccatgt 240  Q
    |||||||||||| | ||||||| |||||||||||||||||| ||||||||||||||||    
T  29923943 taactgccgatgaggttatattagtaaattactggtgttttccagccaaacaccatgt 29924000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 9372059 - 9372002
Alignment:
Q  190 cgatgggattatattggtaaattactggtgtttttcagccaaacaccatgtgtgaaca 247  Q
    ||||||| |||||||||||||||| | ||| |||||||||||||||  ||||||||||    
T  9372059 cgatggggttatattggtaaattatttgtgcttttcagccaaacactttgtgtgaaca 9372002  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 14922765 - 14922834
Alignment:
Q  183 taactgccgatgggattatattggtaaattactggtgtttttcagccaaacaccatgtgtgaacagcatt 252  Q
    ||||| |||||||| ||||||||| |||||| || ||||||||||||||| || || |||||||| ||||    
T  14922765 taactaccgatggggttatattggaaaattattgttgtttttcagccaaatactatatgtgaacaacatt 14922834  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 14389344 - 14389308
Alignment:
Q  198 ttatattggtaaattactggtgtttttcagccaaaca 234  Q
    ||||||| |||||||||||||||||||||||||||||    
T  14389344 ttatattagtaaattactggtgtttttcagccaaaca 14389308  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 5357650 - 5357693
Alignment:
Q  183 taactgccgatgggattatattggtaaattactggtgtttttca 226  Q
    |||||||||||| | |||||||||||||||||| ||||||||||    
T  5357650 taactgccgatgaggttatattggtaaattactagtgtttttca 5357693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 22990142 - 22990106
Alignment:
Q  211 ttactggtgtttttcagccaaacaccatgtgtgaaca 247  Q
    |||||||| |||||||||||||||| |||||||||||    
T  22990142 ttactggtatttttcagccaaacacaatgtgtgaaca 22990106  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 33929955 - 33930024
Alignment:
Q  183 taactgccgatgggattatattggtaaattactggtgtttttcagccaaacaccatgtgtgaacagcatt 252  Q
    ||||| |||||| || ||||||| ||||||||||||||||| ||||||||||  ||||||||||| ||||    
T  33929955 taactaccgatgagagtatattgataaattactggtgttttccagccaaacattatgtgtgaacaacatt 33930024  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 6687686 - 6687736
Alignment:
Q  128 tgaagattgctattgacactttaggtttgactgaaaaacacaagtaaaaga 178  Q
    ||||||||| | |||||||||||||||||| ||||||||||| ||||||||    
T  6687686 tgaagattgatgttgacactttaggtttgaatgaaaaacacatgtaaaaga 6687736  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 25103639 - 25103707
Alignment:
Q  183 taactgccgatgggattatattggtaaattactggtgtttttcagccaaacaccatgtgtgaacagcatt 252  Q
    |||| |||||||||||| ||||| |||||||| |||| |||||||||||| ||||| |||||||| ||||    
T  25103639 taaccgccgatgggattgtattgataaattaccggtg-ttttcagccaaataccatatgtgaacaacatt 25103707  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 33575466 - 33575517
Alignment:
Q  201 tattggtaaattactggtgtttttcagccaaacaccatgtgtgaacagcatt 252  Q
    ||||| ||||||||||||||||||||||||||||  || |||||||| ||||    
T  33575466 tattgataaattactggtgtttttcagccaaacattatatgtgaacatcatt 33575517  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 25103538 - 25103588
Alignment:
Q  129 gaagattgctattgacactttaggtttgactgaaaaacacaagtaaaagac 179  Q
    |||||||| | |||||| |||||||||| |||||||| |||||||||||||    
T  25103538 gaagattgttgttgacaatttaggtttggctgaaaaatacaagtaaaagac 25103588  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 41733006 - 41733053
Alignment:
Q  198 ttatattggtaaattactggtgtttttcagccaaacaccatgtgtgaa 245  Q
    |||||||| ||||||| || |||||||||||||||||| |||||||||    
T  41733006 ttatattgataaattattgatgtttttcagccaaacactatgtgtgaa 41733053  T

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