View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10195_low_13 (Length: 257)
Name: NF10195_low_13
Description: NF10195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10195_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8425169 - 8425407
Alignment:
| Q |
1 |
aatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctgatctcaggaagaaggttttgccagctgccatcgttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8425169 |
aatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgtagaagggaaaacctgatctcaggaagaaggttttgccagctgtcatcgttc |
8425268 |
T |
|
| Q |
101 |
gccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaatgaaaggttctgc |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8425269 |
gtcagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaatgaaaggttctgc |
8425368 |
T |
|
| Q |
201 |
tatcactggaccaattggtaaggggtgtgttgatctttg |
239 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
8425369 |
tatcactggaccaattggtaaggagtgtgctgatctttg |
8425407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 30234256 - 30234406
Alignment:
| Q |
1 |
aatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctgatctcaggaagaaggttttgccagctgccatcgttc |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
30234256 |
aatcgtcttccttcagcttgtgctggtgacatggtgatggctactgtgaagaagggaaagcctgatctcaggaagaaggttttgccagctgtcatcgttc |
30234355 |
T |
|
| Q |
101 |
gccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaag |
151 |
Q |
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| ||| | ||||| ||||||| |||||| ||||||||||||||||| |||| |
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|
| T |
30234356 |
gtcagcgtaagccatggcgccgaaaggacggtgtcttcatgtactttgaag |
30234406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 30235004 - 30235049
Alignment:
| Q |
150 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30235004 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
30235049 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 22476202 - 22475960
Alignment:
| Q |
1 |
aatcgtcttccttcagcttgtgttggtgacatggtgat----ggctactatgaagaagggaaaacctgatctcaggaagaaggttttgccagctgccatc |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| || |||| |
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|
| T |
22476202 |
aatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaagggaaaacctgatctcatgaagaaggttttgccagttgtcatc |
22476103 |
T |
|
| Q |
97 |
gttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaatgaaaggtt |
196 |
Q |
| |
|
||||| ||| | ||||||||||||| ||| ||| ||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
22476102 |
gttcgtcagcgtaagccttggcgccaaaatgattgtgtcttcatgtacttcaaagataatgccggcgttattgtgaatcctaagggagaaatgaaaggtt |
22476003 |
T |
|
| Q |
197 |
ctgctatcactggaccaattggtaaggggtgtgttgatctttg |
239 |
Q |
| |
|
|||||||||||||||||||||| || | ||||| ||| ||||| |
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|
| T |
22476002 |
ctgctatcactggaccaattggcaacgagtgtgctgagctttg |
22475960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 26842290 - 26842378
Alignment:
| Q |
1 |
aatcgtcttccttcagcttgtgttggtgacatggtgat----ggctactatgaagaagggaaaacctgatctcaggaagaaggttttgc |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||| |
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|
| T |
26842290 |
aatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaagggaatacctgatctcaggaagaaggttttgc |
26842378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 26849095 - 26849175
Alignment:
| Q |
109 |
aagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaatg |
189 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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|
| T |
26849095 |
aagccttgacgccaaaaggattgtgtcttcatgtacttcgaagataatgccggcgttattgtgaatcctaagggagaaatg |
26849175 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1530512 - 1530754
Alignment:
| Q |
1 |
aatcgtcttccttcagcttgtgttggtgacatggtgat----ggctactatgaagaagggaaaacctgatctcaggaagaaggttttgccagctgccatc |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| || |||| |
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|
| T |
1530512 |
aatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaaggggaaacctgatctcaggaagaaggttttgccagttgtcatc |
1530611 |
T |
|
| Q |
97 |
gttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaatgaaaggtt |
196 |
Q |
| |
|
||||| ||| | ||||||||||||| ||||||| ||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||| || |
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|
| T |
1530612 |
gttcgtcagcgtaagccttggcgccaaaaggatcgtgtcttcatgtacttcaaagataatgacggcattattgtgaatcctaagggagaaatgaaagatt |
1530711 |
T |
|
| Q |
197 |
ctgctatcactggaccaattggtaaggggtgtgttgatctttg |
239 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||| ||||| |
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|
| T |
1530712 |
atgctatcactggaccaattggtaacgagtgtgctgagctttg |
1530754 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 26797915 - 26797843
Alignment:
| Q |
161 |
gtgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggggtgtgttgat |
234 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||| |||||||| | ||| |||||||| |||| ||||| |||| |
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|
| T |
26797915 |
gtgttattgttaatccaaagg-agaaatgaaagggtctgctattagtggtccaattgggaaggagtgtgctgat |
26797843 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 39327952 - 39327811
Alignment:
| Q |
10 |
ccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctgatctcaggaagaaggttttgccagctgccatcgttcgccagtgca |
109 |
Q |
| |
|
||||||||||| | |||||||||||||||||| || ||||||||||||| ||||||||| | |||||||| | || || | ||||||||| ||| | | |
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|
| T |
39327952 |
ccttcagcttgcgctggtgacatggtgatggccaccgtgaagaagggaaagcctgatctccgtaagaaggtgcttcctgccgtcatcgttcgtcagcgta |
39327853 |
T |
|
| Q |
110 |
agccttggcgcccaaaggatggtgtcttcatgtacttcgaag |
151 |
Q |
| |
|
| || ||||||| |||||| ||||| |||||||||||||||| |
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|
| T |
39327852 |
aaccatggcgccgaaaggacggtgttttcatgtacttcgaag |
39327811 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 39327713 - 39327668
Alignment:
| Q |
150 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
195 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
39327713 |
agataatgctggtgttattgttaatcccaaaggagaaatgaaaggt |
39327668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 39718826 - 39718781
Alignment:
| Q |
150 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
195 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||||||| |||||| |
|
|
| T |
39718826 |
agataatgctggtgttattgttaatcccaaaggagaaataaaaggt |
39718781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 29758696 - 29758741
Alignment:
| Q |
150 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29758696 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
29758741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 25153751 - 25153794
Alignment:
| Q |
150 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaag |
193 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25153751 |
agataattctggtgttattgttaatcctaagggagaaatgaaag |
25153794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 5690166 - 5690119
Alignment:
| Q |
192 |
aggttctgctatcactggaccaattggtaaggggtgtgttgatctttg |
239 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| ||||| ||||||||| |
|
|
| T |
5690166 |
aggttccgctatcacaggaccaattggtaaggagtgtgctgatctttg |
5690119 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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