View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10195_low_16 (Length: 240)

Name: NF10195_low_16
Description: NF10195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10195_low_16
NF10195_low_16
[»] chr5 (8 HSPs)
chr5 (17-240)||(10873136-10873359)
chr5 (17-240)||(10878207-10878430)
chr5 (17-240)||(10883278-10883501)
chr5 (19-240)||(10866946-10867174)
chr5 (19-240)||(10887195-10887419)
chr5 (19-240)||(39676510-39676717)
chr5 (183-236)||(10046570-10046623)
chr5 (23-92)||(10046746-10046815)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 10873136 - 10873359
Alignment:
Q  17 acctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10873136 acctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcact 10873235  T
Q  117 tatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10873236 tatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaa 10873335  T
Q  217 ttttgaggatcttctaaaaagaat 240  Q
    ||||||||||||||||||||||||    
T  10873336 ttttgaggatcttctaaaaagaat 10873359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 10878207 - 10878430
Alignment:
Q  17 acctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10878207 acctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcact 10878306  T
Q  117 tatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10878307 tatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaa 10878406  T
Q  217 ttttgaggatcttctaaaaagaat 240  Q
    ||||||||||||||||||||||||    
T  10878407 ttttgaggatcttctaaaaagaat 10878430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 10883278 - 10883501
Alignment:
Q  17 acctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10883278 acctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcact 10883377  T
Q  117 tatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10883378 tatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaa 10883477  T
Q  217 ttttgaggatcttctaaaaagaat 240  Q
    ||||||||||||||||||||||||    
T  10883478 ttttgaggatcttctaaaaagaat 10883501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 10867174 - 10866946
Alignment:
Q  19 ctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcactta 118  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  10867174 ctagtgtacaaattctttcctgccatagtagctttaatactctgtaatcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaaacaatta 10867075  T
Q  119 tccaaatga---gtaatttcaacaaa----atttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaat 211  Q
    | |||||||   ||||||||||||||    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10867074 ttcaaatgactagtaatttcaacaaataaaatttaaagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaat 10866975  T
Q  212 caaaattttgaggatcttctaaaaagaat 240  Q
    |||||||||||||||||||||||||||||    
T  10866974 caaaattttgaggatcttctaaaaagaat 10866946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 10887195 - 10887419
Alignment:
Q  19 ctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcactta 118  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  10887195 ctagtgtataaattctttcctgccatagtagctttaatactctgtaatcttgcaaatctacttgacctaaataaatattgcagagaaaatcaatcagtta 10887294  T
Q  119 tccaaat---gagtaatttcaac----aaaatttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaat 211  Q
    |||||||    ||||||||||||    |||||||| |||||||| ||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  10887295 tccaaataagtagtaatttcaacaaataaaatttaaagtgaaaccgaagaaagttcaaaattgaaaa----ttacttgttgaaagtgtgagagagggaat 10887390  T
Q  212 caaaattttgaggatcttctaaaaagaat 240  Q
    |||||||||||||||||||||||||||||    
T  10887391 caaaattttgaggatcttctaaaaagaat 10887419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 39676717 - 39676510
Alignment:
Q  19 ctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcactta 118  Q
    |||||||||||||||||||| || ||||||||||||||| | |||| |||||||||||||||||||||||||| |||||  | | ||||||||| | |||    
T  39676717 ctagtgtataaattctttcctgctatagtagctttaatattttgtaatcttgcaaatctacttgacctaaatatatatccaaaacaaaatcaattaatta 39676618  T
Q  119 tccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaatt 218  Q
    ||||||||||| |||||||||||| ||               ||| ||||||||| |||| ||||||||||||||| || ||||||| ||||||||||||    
T  39676617 tccaaatgagtcatttcaacaaaaatt--------------caaaattcaaaattcaaaaatacttacttgttgaatgtatgagagatggaatcaaaatt 39676532  T
Q  219 ttgaggatcttctaaaaagaat 240  Q
    | |||||||||| |||||||||    
T  39676531 tagaggatcttccaaaaagaat 39676510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 10046623 - 10046570
Alignment:
Q  183 ttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10046623 ttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaa 10046570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 10046815 - 10046746
Alignment:
Q  23 tgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataa 92  Q
    |||||||||||||||| ||||| || ||||||||| |||||| ||| ||||||||||||||||| |||||    
T  10046815 tgtataaattctttcctgccattgttgctttaatattctgtaatctcgcaaatctacttgacctgaataa 10046746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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